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Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Biosensors & bioelectronics, 2015-01, Vol.63, p.218-231

2015

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Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

Microbiome, 2019-05, Vol.7 (1), p.75-18, Article 75

2019

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Consistent estimation of Gibbs energy using component contributions

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003098-e1003098

2013

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Automated microfluidic cell culture of stem cell derived dopaminergic neurons

Scientific reports, 2019-02, Vol.9 (1), p.1796-1796, Article 1796

2019

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Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

PloS one, 2012-09, Vol.7 (9), p.e45635-e45635

2012

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Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

PLoS computational biology, 2016-11, Vol.12 (11), p.e1004999-e1004999

2016

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A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines

PLoS computational biology, 2017-08, Vol.13 (8), p.e1005698

2017

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Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Nature biotechnology, 2017-01, Vol.35 (1), p.81

2017

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Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000312-e1000312

2009

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A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm

PloS one, 2012-04, Vol.7 (4), p.e34337

2012

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Monitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole–time of flight mass spectrometry (UPLC–Q–ToF-MS)

Analytical and bioanalytical chemistry, 2012-01, Vol.402 (3), p.1183-1198

2012

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Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

Nature biotechnology, 2023-09, Vol.41 (9), p.1320

2023

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Identification of metabolites reproducibly associated with Parkinson’s Disease via meta-analysis and computational modelling

NPJ Parkinson's Disease, 2024-06, Vol.10 (1), p.126-17, Article 126

2024

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Modeling the effects of commonly used drugs on human metabolism

The FEBS journal, 2015-01, Vol.282 (2), p.297-317

2015

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Prediction of intracellular metabolic states from extracellular metabolomic data

Metabolomics, 2015-06, Vol.11 (3), p.603-619

2015

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von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

Bioinformatics, 2011-01, Vol.27 (1), p.142-143

2011

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Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

Journal of cheminformatics, 2017-06, Vol.9 (1), p.39-39, Article 39

2017

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Omics data integration suggests a potential idiopathic Parkinson's disease signature

Communications biology, 2023-11, Vol.6 (1), p.1179-1179, Article 1179

2023

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Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

Lab on a chip, 2015-06, Vol.15 (11), p.2419-2428

2015

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Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

Molecular systems biology, 2020-05, Vol.16 (5), p.e8982-n/a

2020

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A systems biology approach to studying the role of microbes in human health

Current opinion in biotechnology, 2013-02, Vol.24 (1), p.4-12

2013

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ReconMap: an interactive visualization of human metabolism

Bioinformatics (Oxford, England), 2017-02, Vol.33 (4), p.605-607

2017

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Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

BMC bioinformatics, 2019-04, Vol.20 (Suppl 4), p.140-140, Article 140

2019

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3D Cultures of Parkinson's Disease‐Specific Dopaminergic Neurons for High Content Phenotyping and Drug Testing

Advanced science, 2019-01, Vol.6 (1), p.1800927-n/a

2019

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Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

Consistent estimation of Gibbs energy using component contributions

Automated microfluidic cell culture of stem cell derived dopaminergic neurons

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm

Monitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole–time of flight mass spectrometry (UPLC–Q–ToF-MS)

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

Identification of metabolites reproducibly associated with Parkinson’s Disease via meta-analysis and computational modelling

Modeling the effects of commonly used drugs on human metabolism

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

Prediction of intracellular metabolic states from extracellular metabolomic data

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

Omics data integration suggests a potential idiopathic Parkinson's disease signature

Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

A systems biology approach to studying the role of microbes in human health

ReconMap: an interactive visualization of human metabolism

Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

3D Cultures of Parkinson's Disease‐Specific Dopaminergic Neurons for High Content Phenotyping and Drug Testing

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