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Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?

Molecular biology and evolution, 2006-03, Vol.23 (3), p.691-700

Felsenstein, Joseph

2006

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A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model

The American naturalist, 2012-02, Vol.179 (2), p.145-156

2012

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Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1917-1932

2012

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Using the quantitative genetic threshold model for inferences between and within species

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2005-07, Vol.360 (1459), p.1427

Felsenstein, Joseph

2005

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Maximum Likelihood Estimation of a Migration Matrix and Effective Population Sizes in n Subpopulations by Using a Coalescent Approach

Proceedings of the National Academy of Sciences - PNAS, 2001-04, Vol.98 (8), p.4563-4568

2001

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Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

Systematic biology, 2015-11, Vol.64 (6), p.1032-1047

2015

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The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

PLoS genetics, 2012-04, Vol.8 (4), p.e1002660-e1002660

2012

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Controlling for non-independence in comparative analysis of patterns across populations within species

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2011-05, Vol.366 (1569), p.1410

2011

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Maximum-Likelihood Estimation of Migration Rates and Effective Population Numbers in Two Populations Using a Coalescent Approach

Genetics (Austin), 1999-06, Vol.152 (2), p.763-773

1999

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An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Systematic biology, 1997-03, Vol.46 (1), p.101-111

1997

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Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised

The American naturalist, 2008-06, Vol.171 (6), p.713-725

2008

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Covariation of gene frequencies in a stepping-stone lattice of populations

Theoretical population biology, 2015-03, Vol.100, p.88-97

Felsenstein, Joseph

2015

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Usefulness of Single Nucleotide Polymorphism Data for Estimating Population Parameters

Genetics (Austin), 2000-09, Vol.156 (1), p.439-447

2000

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Covariation of gene frequencies in a stepping-stone lattice of populations1

Theoretical population biology, 2014-12, Vol.100C, p.88-97

Felsenstein, Joseph

2014

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[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Methods in Enzymology, 1996, Vol.266, p.418-427

Felsenstein, Joseph

1996

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Evolutionary trees from DNA sequences: a maximum likelihood approach

Journal of molecular evolution, 1981-01, Vol.17 (6), p.368-376

Felsenstein, J

1981

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Taking variation of evolutionary rates between sites into account in inferring phylogenies

Journal of molecular evolution, 2001-10, Vol.53 (4-5), p.447-455

Felsenstein, J

2001

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An evolutionary model for maximum likelihood alignment of DNA sequences

Journal of molecular evolution, 1991-08, Vol.33 (2), p.114-124

1991

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Inching toward reality : an improved likelihood model of sequence evolution

Journal of molecular evolution, 1992, Vol.34 (1), p.3-16

1992

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A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Genetics (Austin), 2008-10, Vol.180 (2), p.1095-1105

2008

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Estimators of the Human Effective Sex Ratio Detect Sex Biases on Different Timescales

American journal of human genetics, 2010-12, Vol.87 (6), p.848-856

2010

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A Hidden Markov Model approach to variation among sites in rate of evolution

Molecular biology and evolution, 1996-01, Vol.13 (1), p.93-104

1996

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Confidence Limits on Phylogenies: An Approach Using the Bootstrap

Evolution, 1985-07, Vol.39 (4), p.783-791

Felsenstein, Joseph

1985

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The Troubled Growth of Statistical Phylogenetics

Systematic biology, 2001-08, Vol.50 (4), p.465-467

Felsenstein, Joseph

2001

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Maximum Likelihood Estimation of Recombination Rates From Population Data

Genetics (Austin), 2000-11, Vol.156 (3), p.1393-1401

2000

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Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?

A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Using the quantitative genetic threshold model for inferences between and within species

Maximum Likelihood Estimation of a Migration Matrix and Effective Population Sizes in n Subpopulations by Using a Coalescent Approach

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

Controlling for non-independence in comparative analysis of patterns across populations within species

Maximum-Likelihood Estimation of Migration Rates and Effective Population Numbers in Two Populations Using a Coalescent Approach

An Alternating Least Squares Approach to Inferring Phylogenies from Pairwise Distances

Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised

Covariation of gene frequencies in a stepping-stone lattice of populations

Usefulness of Single Nucleotide Polymorphism Data for Estimating Population Parameters

Covariation of gene frequencies in a stepping-stone lattice of populations1

[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

Evolutionary trees from DNA sequences: a maximum likelihood approach

Taking variation of evolutionary rates between sites into account in inferring phylogenies

An evolutionary model for maximum likelihood alignment of DNA sequences

Inching toward reality : an improved likelihood model of sequence evolution

A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree

Estimators of the Human Effective Sex Ratio Detect Sex Biases on Different Timescales

A Hidden Markov Model approach to variation among sites in rate of evolution

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

The Troubled Growth of Statistical Phylogenetics

Maximum Likelihood Estimation of Recombination Rates From Population Data

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