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The clarifying role of time series data in the population genetics of HIV

PLoS genetics, 2021-01, Vol.17 (1), p.e1009050

2021

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Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

PLoS genetics, 2018-06, Vol.14 (6), p.e1007420-e1007420

2018

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Identifying signatures of selection in genetic time series

Genetics (Austin), 2014-02, Vol.196 (2), p.509-522

2014

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Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome

PLoS genetics, 2011-10, Vol.7 (10), p.e1002326-e1002326

2011

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Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity

eLife, 2021-09, Vol.10

2021

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LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data

PloS one, 2012-11, Vol.7 (11), p.e48588-e48588

2012

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Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis

PLoS pathogens, 2023-12, Vol.19 (12), p.e1011817-e1011817

2023

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Comparison of different approaches tracking a wing-tip vortex

Ocean engineering, 2018-01, Vol.147, p.659-675

2018

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Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

PLoS genetics, 2018-12, Vol.14 (12), p.e1007855-e1007855

2018

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A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host

PLoS pathogens, 2017-05, Vol.13 (5), p.e1006358-e1006358

2017

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More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

eLife, 2016-02, Vol.5

2016

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Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces

G3 : genes - genomes - genetics, 2019-10, Vol.9 (10), p.3395-3407

2019

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State-dependent evolutionary models reveal modes of solid tumour growth

Nature ecology & evolution, 2023-04, Vol.7 (4), p.581

2023

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Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo

Molecular biology and evolution, 2024-01, Vol.41 (1)

2024

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Returning Organic Residues to Agricultural Land (RORAL) – Fuelling the Follow-the-Technology approach

Agricultural systems, 2014-02, Vol.124, p.60-69

2014

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Fate and behaviour of Cu and Zn from pig slurry spreading in a tropical water–soil–plant system

Agriculture, ecosystems & environment, 2013-01, Vol.164, p.70-79

2013

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The Relationship Between Haplotype-Based FST and Haplotype Length

Genetics (Austin), 2019-09, Vol.213 (1), p.281-295

2019

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The Relationship Between Haplotype-Based F ST and Haplotype Length

Genetics (Austin), 2019-09, Vol.213 (1), p.281-295

2019

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Retention and leaching of nitrate and chloride in an andic soil after pig manure amendment

European journal of soil science, 2007-04, Vol.58 (2), p.393-404

2007

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Pretreatment of Soil Samples Rich in Short-Range-Order Minerals Before Particle-Size Analysis by the Pipette Method

Pedosphere, 2013-02, Vol.23 (1), p.20-28

2013

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The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Molecular ecology, 2016-01, Vol.25 (1), p.42-66

2016

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Fate and impacts of pharmaceuticals and personal care products after repeated applications of organic waste products in long-term field experiments

The Science of the total environment, 2017-12, Vol.607-608, p.271-280

2017

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Correction: More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

eLife, 2017-01, Vol.6

2017

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A solid-solution model for Fe(II)-Fe(III)-Mg(II) green rusts and fougerite and estimation of their Gibbs free energies of formation

Clays and clay minerals, 2004-06, Vol.52 (3), p.382-394

2004

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In situ Mössbauer spectroscopy: Evidence for green rust (fougerite) in a gleysol and its mineralogical transformations with time and depth

Geochimica et cosmochimica acta, 2005-09, Vol.69 (18), p.4463-4483

2005

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The clarifying role of time series data in the population genetics of HIV

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

Identifying signatures of selection in genetic time series

Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome

Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity

LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data

Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis

Comparison of different approaches tracking a wing-tip vortex

Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host

More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces

State-dependent evolutionary models reveal modes of solid tumour growth

Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo

Returning Organic Residues to Agricultural Land (RORAL) – Fuelling the Follow-the-Technology approach

Fate and behaviour of Cu and Zn from pig slurry spreading in a tropical water–soil–plant system

The Relationship Between Haplotype-Based FST and Haplotype Length

The Relationship Between Haplotype-Based F ST and Haplotype Length

Retention and leaching of nitrate and chloride in an andic soil after pig manure amendment

Pretreatment of Soil Samples Rich in Short-Range-Order Minerals Before Particle-Size Analysis by the Pipette Method

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Fate and impacts of pharmaceuticals and personal care products after repeated applications of organic waste products in long-term field experiments

Correction: More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

A solid-solution model for Fe(II)-Fe(III)-Mg(II) green rusts and fougerite and estimation of their Gibbs free energies of formation

In situ Mössbauer spectroscopy: Evidence for green rust (fougerite) in a gleysol and its mineralogical transformations with time and depth

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