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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

Genome Biology, 2020-06, Vol.21 (1), p.130-130, Article 130

2020

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Long non―coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

Nature (London), 2012-11, Vol.491 (7424), p.454-457

2012

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A predictive computational framework for direct reprogramming between human cell types

Nature genetics, 2016-03, Vol.48 (3), p.331-335

2016

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MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines

PloS one, 2009-08, Vol.4 (8), p.e6677

2009

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scMatch: a single-cell gene expression profile annotation tool using reference datasets

Bioinformatics, 2019-11, Vol.35 (22), p.4688-4695

2019

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Effects of cytosine methylation on transcription factor binding sites

BMC genomics, 2014-03, Vol.15 (1), p.119-119, Article 119

2014

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Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

PLoS genetics, 2017-03, Vol.13 (3), p.e1006641-e1006641

2017

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Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

Nucleic acids research, 2015-08, Vol.43 (14), p.6787

2015

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Systematic analysis of transcription start sites in avian development

PLoS biology, 2017-09, Vol.15 (9), p.e2002887-e2002887

2017

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The regulated retrotransposon transcriptome of mammalian cells

Nature genetics, 2009-05, Vol.41 (5), p.563-571

2009

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Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

Blood, 2014-04, Vol.123 (17), p.e58-e67

2014

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LRRN4 and UPK3B are markers of primary mesothelial cells

PloS one, 2011-10, Vol.6 (10), p.e25391-e25391

2011

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

Nature genetics, 2014-06, Vol.46 (6), p.558-566

2014

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Tiny RNAs associated with transcription start sites in animals

Nature genetics, 2009-05, Vol.41 (5), p.572-578

2009

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Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells

PloS one, 2014-03, Vol.9 (3), p.e80274-e80274

2014

Volltextzugriff (PDF)

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

Nucleic acids research, 2015-08, Vol.43 (14), p.6969

2015

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Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution

Diabetes (New York, N.Y.), 2017-01, Vol.66 (1), p.218-230

2017

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Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Nature biotechnology, 2014-03, Vol.32 (3), p.217-219

2014

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Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages

Scientific reports, 2018-04, Vol.8 (1), p.6758-13, Article 6758

2018

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Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease

Frontiers in cellular neuroscience, 2015-04, Vol.9, p.114-114

2015

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Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020

Human genomics, 2020-07, Vol.14 (1), p.27-27, Article 27

2020

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Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel

Skeletal muscle, 2021-09, Vol.11 (1), p.23-23, Article 23

2021

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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

Long non―coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

A predictive computational framework for direct reprogramming between human cell types

Gateways to the FANTOM5 promoter level mammalian expression atlas

MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines

scMatch: a single-cell gene expression profile annotation tool using reference datasets

Effects of cytosine methylation on transcription factor binding sites

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

Systematic analysis of transcription start sites in avian development

The regulated retrotransposon transcriptome of mammalian cells

Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

LRRN4 and UPK3B are markers of primary mesothelial cells

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

Tiny RNAs associated with transcription start sites in animals

Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages

Genome-wide analysis of mammalian promoter architecture and evolution

Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease

Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020

Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel

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