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Methodological guidance for the evaluation and updating of clinical prediction models: a systematic review

BMC medical research methodology, 2022-12, Vol.22 (1), p.316-316, Article 316

2022

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Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements

Genome Biology, 2015-01, Vol.16 (1), p.14-14, Article 14

2015

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Nonnegative spatial factorization applied to spatial genomics

Nature methods, 2023-02, Vol.20 (2), p.229

2023

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Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis

PLoS genetics, 2010-09, Vol.6 (9), p.e1001117-e1001117

2010

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A robust nonlinear low-dimensional manifold for single cell RNA-seq data

BMC bioinformatics, 2020-07, Vol.21 (1), p.1-324, Article 324

2020

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netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis

Genome research, 2020-02, Vol.30 (2), p.195

2020

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Joint analysis of expression levels and histological images identifies genes associated with tissue morphology

Nature communications, 2021-03, Vol.12 (1), p.1609-1609, Article 1609

2021

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Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs

PLoS genetics, 2013-08, Vol.9 (8), p.e1003649-e1003649

2013

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Clustering gene expression time series data using an infinite Gaussian process mixture model

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005896

2018

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A Poisson reduced-rank regression model for association mapping in sequencing data

BMC bioinformatics, 2022-12, Vol.23 (1), p.529-529, Article 529

2022

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Optimal marker gene selection for cell type discrimination in single cell analyses

Nature communications, 2021-02, Vol.12 (1), p.1186-1186, Article 1186

2021

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Inappropriate stereotypical inferences? An adversarial collaboration in experimental ordinary language philosophy

Synthese (Dordrecht), 2021-11, Vol.198 (11), p.10127-10168

2021

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Optimizing the design of spatial genomic studies

Nature communications, 2024-06, Vol.15 (1), p.4987-10, Article 4987

2024

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The Development of Intention-Based Morality: The Influence of Intention Salience and Recency, Negligence, and Outcome on Children's and Adults' Judgments

Developmental psychology, 2017-10, Vol.53 (10), p.1895-1911

2017

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Gender Differences in Utilization of Duty-hour Regulations, Aspects of Burnout, and Psychological Well-being Among General Surgery Residents in the United States

Annals of surgery, 2018-08, Vol.268 (2), p.204-211

2018

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Prediction models for patients with esophageal or gastric cancer: A systematic review and meta-analysis

PloS one, 2018-02, Vol.13 (2), p.e0192310-e0192310

2018

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Genetically-Mediated Associations Between Measures of Childhood Character and Academic Achievement

Journal of personality and social psychology, 2016-11, Vol.111 (5), p.790-815

2016

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Fragmented and conflicted: folk beliefs about vision

Synthese (Dordrecht), 2023-02, Vol.201 (3), p.84, Article 84

2023

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Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering

PLoS computational biology, 2016-07, Vol.12 (7), p.e1004791-e1004791

2016

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Genes Unite Executive Functions in Childhood

Psychological science, 2015-08, Vol.26 (8), p.1151-1163

2015

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Sparse multi-output Gaussian processes for online medical time series prediction

BMC medical informatics and decision making, 2020-07, Vol.20 (1), p.152-152, Article 152

2020

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Causal network inference from gene transcriptional time-series response to glucocorticoids

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008223

2021

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Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

Genome research, 2018-09, Vol.28 (9), p.1272

2018

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The reef-building coral Galaxea fascicularis: a new model system for coral symbiosis research

Coral reefs, 2023-02, Vol.42 (1), p.239-252

2023

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Experimental ordinary language philosophy: a cross-linguistic study of defeasible default inferences

Synthese (Dordrecht), 2021-02, Vol.198 (2), p.1029-1070

2021

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Methodological guidance for the evaluation and updating of clinical prediction models: a systematic review

Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements

Nonnegative spatial factorization applied to spatial genomics

Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis

A robust nonlinear low-dimensional manifold for single cell RNA-seq data

netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis

Joint analysis of expression levels and histological images identifies genes associated with tissue morphology

Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs

Clustering gene expression time series data using an infinite Gaussian process mixture model

A Poisson reduced-rank regression model for association mapping in sequencing data

Optimal marker gene selection for cell type discrimination in single cell analyses

Inappropriate stereotypical inferences? An adversarial collaboration in experimental ordinary language philosophy

Optimizing the design of spatial genomic studies

The Development of Intention-Based Morality: The Influence of Intention Salience and Recency, Negligence, and Outcome on Children's and Adults' Judgments

Gender Differences in Utilization of Duty-hour Regulations, Aspects of Burnout, and Psychological Well-being Among General Surgery Residents in the United States

Prediction models for patients with esophageal or gastric cancer: A systematic review and meta-analysis

Genetically-Mediated Associations Between Measures of Childhood Character and Academic Achievement

Fragmented and conflicted: folk beliefs about vision

Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering

Genes Unite Executive Functions in Childhood

Sparse multi-output Gaussian processes for online medical time series prediction

Causal network inference from gene transcriptional time-series response to glucocorticoids

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

The reef-building coral Galaxea fascicularis: a new model system for coral symbiosis research

Experimental ordinary language philosophy: a cross-linguistic study of defeasible default inferences

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