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The causes and consequences of subgenome dominance in hybrids and recent polyploids

The New phytologist, 2018-10, Vol.220 (1), p.87-93

2018

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Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution

PLoS genetics, 2014-07, Vol.10 (7), p.e1004487-e1004487

2014

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Origin and evolution of the octoploid strawberry genome

Nature genetics, 2019-03, Vol.51 (3), p.541-547

2019

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Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

Molecular biology and evolution, 2016-02, Vol.33 (2), p.394-412

2016

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The pangenome of an agronomically important crop plant Brassica oleracea

Nature communications, 2016-11, Vol.7 (1), p.13390-8, Article 13390

2016

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Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

Nature communications, 2020-02, Vol.11 (1), p.884-11, Article 884

2020

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Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

Chromosome research, 2009-07, Vol.17 (5), p.699-717

2009

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Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

Nature (London), 2015-11, Vol.527 (7579), p.508-511

2015

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Genome-wide association of volatiles reveals candidate loci for blueberry flavor

The New phytologist, 2020-06, Vol.226 (6), p.1725-1737

2020

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Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

The Plant cell, 2017-09, Vol.29 (9), p.2150-2167

2017

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butterfly plant arms-race escalated by gene and genome duplications

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (27), p.8362-8366

2015

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Reply to: Revisiting the origin of octoploid strawberry

Nature genetics, 2020-01, Vol.52 (1), p.5-7

2020

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A galling insect activates plant reproductive programs during gall development

Scientific reports, 2019-02, Vol.9 (1), p.1833-1833, Article 1833

2019

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Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution

Frontiers in plant science, 2020-02, Vol.10, p.1789

2020

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Polyploid Evolution of the Brassicaceae during the Cenozoic Era

The Plant cell, 2014-07, Vol.26 (7), p.2777-2791

2014

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PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana

The Plant journal : for cell and molecular biology, 2017-01, Vol.89 (2), p.204-220

2017

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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

PloS one, 2016-01, Vol.11 (1), p.e0146062-e0146062

2016

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Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

The New phytologist, 2012-10, Vol.196 (2), p.596-605

2012

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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

PLoS genetics, 2018-03, Vol.14 (3), p.e1007267-e1007267

2018

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Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry

Nature communications, 2024-03, Vol.15 (1), p.2491-2491, Article 2491

2024

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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

BMC evolutionary biology, 2010-02, Vol.10, p.61

2010

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Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory

Nature communications, 2023-01, Vol.14 (1), p.343-343, Article 343

2023

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Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

Gigascience, 2019-01, Vol.8 (3)

2019

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Machine learning approaches to identify core and dispensable genes in pangenomes

The plant genome, 2022-03, Vol.15 (1), p.e20135-n/a

2022

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A chromosome‐scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition

Molecular ecology resources, 2022-01, Vol.22 (1), p.345-360

2022

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The causes and consequences of subgenome dominance in hybrids and recent polyploids

Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution

Origin and evolution of the octoploid strawberry genome

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

The pangenome of an agronomically important crop plant Brassica oleracea

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

Genome-wide association of volatiles reveals candidate loci for blueberry flavor

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

butterfly plant arms-race escalated by gene and genome duplications

Reply to: Revisiting the origin of octoploid strawberry

A galling insect activates plant reproductive programs during gall development

Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution

Polyploid Evolution of the Brassicaceae during the Cenozoic Era

PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory

Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

Machine learning approaches to identify core and dispensable genes in pangenomes

A chromosome‐scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition

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