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An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

Breast cancer research and treatment, 2010-10, Vol.123 (3), p.725-731

2010

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Jetset: selecting the optimal microarray probe set to represent a gene

BMC bioinformatics, 2011-12, Vol.12 (1), p.474-474, Article 474

2011

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Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

The New England journal of medicine, 2012-03, Vol.366 (10), p.883-892

2012

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An online atlas of human plasma metabolite signatures of gut microbiome composition

Nature communications, 2022, Vol.13 (1), p.5370-5370, Article 5370

2022

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A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers

Nature genetics, 2006-09, Vol.38 (9), p.1043-1048

2006

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Efficacy of Neoadjuvant Cisplatin in Triple-Negative Breast Cancer

Journal of clinical oncology, 2010-03, Vol.28 (7), p.1145-1153

2010

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Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents

Cancer discovery, 2012-04, Vol.2 (4), p.366-375

2012

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Paradoxical Relationship between Chromosomal Instability and Survival Outcome in Cancer

Cancer research (Chicago, Ill.), 2011-05, Vol.71 (10), p.3447-3452

2011

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Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer

NPJ breast cancer, 2018-07, Vol.4 (1), p.16-4, Article 16

2018

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Tumor mutation burden forecasts outcome in ovarian cancer with BRCA1 or BRCA2 mutations

PloS one, 2013-11, Vol.8 (11), p.e80023-e80023

2013

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Streptococcus Species Abundance in the Gut Is Linked to Subclinical Coronary Atherosclerosis in 8973 Participants From the SCAPIS Cohort

Circulation (New York, N.Y.), 2023-08, Vol.148 (6), p.459-472

2023

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large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

Proceedings of the National Academy of Sciences - PNAS, 2008-12, Vol.105 (52), p.20870-20875

2008

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An Extensively Hydrolyzed Formula Supplemented with Two Human Milk Oligosaccharides Modifies the Fecal Microbiome and Metabolome in Infants with Cow's Milk Protein Allergy

International journal of molecular sciences, 2023-07, Vol.24 (14), p.11422

2023

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GATA transcription factors directly regulate the Parkinson's disease-linked gene α-synuclein

Proceedings of the National Academy of Sciences - PNAS, 2008-08, Vol.105 (31), p.10907-10912

2008

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Molecular markers of early Parkinson's disease based on gene expression in blood

Proceedings of the National Academy of Sciences - PNAS, 2007-01, Vol.104 (3), p.955-960

2007

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Chromosomal instability determines taxane response

Proceedings of the National Academy of Sciences - PNAS, 2009-05, Vol.106 (21), p.8671-8676

2009

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Author Correction: An online atlas of human plasma metabolite signatures of gut microbiome composition

Nature communications, 2023-05, Vol.14 (1), p.2971-2971, Article 2971

2023

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Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples

PloS one, 2009-05, Vol.4 (5), p.e5645-e5645

2009

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The CIN4 chromosomal instability qPCR classifier defines tumor aneuploidy and stratifies outcome in grade 2 breast cancer

PloS one, 2013-02, Vol.8 (2), p.e56707-e56707

2013

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Assessment of an RNA interference screen-derived mitotic and ceramide pathway metagene as a predictor of response to neoadjuvant paclitaxel for primary triple-negative breast cancer: a retrospective analysis of five clinical trials

The lancet oncology, 2010-04, Vol.11 (4), p.358-365

2010

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Biasogram: visualization of confounding technical bias in gene expression data

PloS one, 2013-04, Vol.8 (4), p.e61872-e61872

2013

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Infant Formula With a Specific Blend of Five Human Milk Oligosaccharides Drives the Gut Microbiota Development and Improves Gut Maturation Markers: A Randomized Controlled Trial

Frontiers in nutrition (Lausanne), 2022-07, Vol.9, p.920362-920362

2022

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Host–microbial co-metabolites modulated by human milk oligosaccharides relate to reduced risk of respiratory tract infections

Frontiers in nutrition (Lausanne), 2022-08, Vol.9, p.935711-935711

2022

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Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

BMC bioinformatics, 2005-04, Vol.6 (1), p.107-107, Article 107

2005

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Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status

PloS one, 2010-12, Vol.5 (12), p.e15031-e15031

2010

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An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

Jetset: selecting the optimal microarray probe set to represent a gene

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

An online atlas of human plasma metabolite signatures of gut microbiome composition

A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers

Efficacy of Neoadjuvant Cisplatin in Triple-Negative Breast Cancer

Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents

Paradoxical Relationship between Chromosomal Instability and Survival Outcome in Cancer

Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer

Tumor mutation burden forecasts outcome in ovarian cancer with BRCA1 or BRCA2 mutations

Streptococcus Species Abundance in the Gut Is Linked to Subclinical Coronary Atherosclerosis in 8973 Participants From the SCAPIS Cohort

large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

An Extensively Hydrolyzed Formula Supplemented with Two Human Milk Oligosaccharides Modifies the Fecal Microbiome and Metabolome in Infants with Cow's Milk Protein Allergy

GATA transcription factors directly regulate the Parkinson's disease-linked gene α-synuclein

Molecular markers of early Parkinson's disease based on gene expression in blood

Chromosomal instability determines taxane response

Author Correction: An online atlas of human plasma metabolite signatures of gut microbiome composition

Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples

The CIN4 chromosomal instability qPCR classifier defines tumor aneuploidy and stratifies outcome in grade 2 breast cancer

Assessment of an RNA interference screen-derived mitotic and ceramide pathway metagene as a predictor of response to neoadjuvant paclitaxel for primary triple-negative breast cancer: a retrospective analysis of five clinical trials

Biasogram: visualization of confounding technical bias in gene expression data

Infant Formula With a Specific Blend of Five Human Milk Oligosaccharides Drives the Gut Microbiota Development and Improves Gut Maturation Markers: A Randomized Controlled Trial

Host–microbial co-metabolites modulated by human milk oligosaccharides relate to reduced risk of respiratory tract infections

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status

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