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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008197-e1008197

2021

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Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

BMC plant biology, 2018-06, Vol.18 (1), p.131-131, Article 131

2018

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Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

BMC plant biology, 2017-12, Vol.17 (1), p.245-245, Article 245

2017

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Contribution of homoeologous exchange to domestication of polyploid Brassica

Genome Biology, 2024-08, Vol.25 (1), p.231-25

2024

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The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol

The New phytologist, 2022-09, Vol.235 (5), p.1884-1899

2022

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A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1

The New phytologist, 2024-02, Vol.241 (3), p.1193-1209

2024

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Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors

The Plant journal : for cell and molecular biology, 2024-02, Vol.117 (4), p.1281-1297

2024

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Analysis of functional redundancies within the Arabidopsis TCP transcription factor family

Journal of experimental botany, 2013-12, Vol.64 (18), p.5673-5685

2013

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(r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

Journal of experimental botany, 2014-09, Vol.65 (17), p.4731-4745

2014

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A catalogue of recombination coldspots in interspecific tomato hybrids

PLoS genetics, 2024-07, Vol.20 (7), p.e1011336

2024

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Solvated docking: introducing water into the modelling of biomolecular complexes

Bioinformatics, 2006-10, Vol.22 (19), p.2340-2347

2006

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Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

The Plant journal : for cell and molecular biology, 2020-05, Vol.102 (3), p.480-492

2020

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Bayesian Markov Random Field analysis for protein function prediction based on network data

PloS one, 2010-02, Vol.5 (2), p.e9293-e9293

2010

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CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

Genome medicine, 2020-08, Vol.12 (1), p.1-75, Article 75

2020

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SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

Genome Biology, 2009-02, Vol.10 (2), p.R24-R24, Article R24

2009

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Solvated protein-protein docking using Kyte-Doolittle-based water preferences

Proteins, structure, function, and bioinformatics, 2013-03, Vol.81 (3), p.510-518

2013

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Simulation of organ patterning on the floral meristem using a polar auxin transport model

PloS one, 2012-01, Vol.7 (1), p.e28762-e28762

2012

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Similarities between plant traits based on their connection to underlying gene functions

PloS one, 2017-08, Vol.12 (8), p.e0182097-e0182097

2017

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A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network

PloS one, 2015-02, Vol.10 (2), p.e0116973-e0116973

2015

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Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes

Plant molecular biology, 2023-01, Vol.111 (1-2), p.153-166

2023

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Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)

2021

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Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction

PLoS computational biology, 2010-11, Vol.6 (11), p.e1001017-e1001017

2010

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Predicting the impact of alternative splicing on plant MADS domain protein function

PloS one, 2012-01, Vol.7 (1), p.e30524-e30524

2012

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Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis

Nature chemical biology, 2014-12, Vol.10 (12), p.1028-1033

2014

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Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators

Plant physiology (Bethesda), 2012-09, Vol.160 (1), p.433-449

2012

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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

Contribution of homoeologous exchange to domestication of polyploid Brassica

The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol

A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1

Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family

(r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

A catalogue of recombination coldspots in interspecific tomato hybrids

Solvated docking: introducing water into the modelling of biomolecular complexes

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

Bayesian Markov Random Field analysis for protein function prediction based on network data

CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

Simulation of organ patterning on the floral meristem using a polar auxin transport model

Similarities between plant traits based on their connection to underlying gene functions

A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network

Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction

Predicting the impact of alternative splicing on plant MADS domain protein function

Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis

Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators

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