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VARNA: Interactive drawing and editing of the RNA secondary structure

Bioinformatics, 2009-08, Vol.25 (15), p.1974-1975

2009

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Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs

PLoS computational biology, 2021-05, Vol.17 (5), p.e1008990-e1008990

2021

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CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

BMC bioinformatics, 2019-01, Vol.20 (1), p.19-19, Article 19

2019

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On the predictibility of A-minor motifs from their local contexts

RNA biology, 2022-12, Vol.19 (1), p.1208-1227

2022

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Mechanisms for U2AF to define 3' splice sites and regulate alternative splicing in the human genome

Nature structural & molecular biology, 2014-11, Vol.21 (11), p.997-1005

2014

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GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

PloS one, 2015-08, Vol.10 (8), p.e0136444-e0136444

2015

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GenRGenS: software for generating random genomic sequences and structures

Bioinformatics, 2006-06, Vol.22 (12), p.1534-1535

2006

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Average complexity of the Jiang–Wang–Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm

Theoretical computer science, 2010-06, Vol.411 (26), p.2423-2432

2010

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Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey

Transactions on Computational Intelligence XIII, 2014, p.70-82

2014

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Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families

Nucleic acids research, 2018-05, Vol.46 (8), p.3841-3851

2018

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On the predictibility of A-minor motifs from their local contexts

RNA biology, 2022-12, Vol.19 (1), p.1208-1227

2022

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Towards a computational model for −1 eukaryotic frameshifting sites

Bioinformatics, 2003-02, Vol.19 (3), p.327-335

2003

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Automated motif extraction and classification in RNA tertiary structures

RNA (Cambridge), 2008-12, Vol.14 (12), p.2489-2497

2008

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Rare Events and Conditional Events on Random Strings

Discrete mathematics and theoretical computer science, 2004-01, Vol.6 no. 2 (2), p.191-214

2004

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A unifying rank aggregation framework to suitably and efficiently aggregate any kind of rankings

International journal of approximate reasoning, 2023-11, Vol.162, p.109035, Article 109035

2023

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BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Advances in Bioinformatics, 2012, Vol.2012 (2012), p.212-216

2012

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Efficient, robust and effective rank aggregation for massive biological datasets

Future generation computer systems, 2021-11, Vol.124, p.406-421

2021

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A meta-approach for improving the prediction and the functional annotation of ortholog groups

BMC genomics, 2014-10, Vol.15 Suppl 6 (S6), p.S16-S16, Article S16

2014

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Rank aggregation with ties: experiments and analysis

Proceedings of the VLDB Endowment, 2015-07, Vol.8 (11), p.1202-1213

2015

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GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization

Bioinformatics (Oxford, England), 2017-08, Vol.33 (16), p.2479-2486

2017

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A meta-approach for improving the prediction and the functional annotation of ortholog groups

BMC genomics, 2014

2014

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A new dichotomic algorithm for the uniform random generation of words in regular languages

Theoretical computer science, 2013-09, Vol.502, p.165-176

2013

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Bounds on Autocorrelation Coefficients of Rudin-Shapiro Polynomials

Analysis mathematica (Budapest), 2019-12, Vol.45 (4), p.705-726

2019

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An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure

IEEE/ACM transactions on computational biology and bioinformatics, 2013-01, Vol.10 (1), p.193-199

2013

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Regulation of splicing enhancer activities by RNA secondary structures

FEBS letters, 2010-11, Vol.584 (21), p.4401-4407

2010

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VARNA: Interactive drawing and editing of the RNA secondary structure

Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs

CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

On the predictibility of A-minor motifs from their local contexts

Mechanisms for U2AF to define 3' splice sites and regulate alternative splicing in the human genome

GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

GenRGenS: software for generating random genomic sequences and structures

Average complexity of the Jiang–Wang–Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm

Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey

Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families

On the predictibility of A-minor motifs from their local contexts

Towards a computational model for −1 eukaryotic frameshifting sites

Automated motif extraction and classification in RNA tertiary structures

Rare Events and Conditional Events on Random Strings

A unifying rank aggregation framework to suitably and efficiently aggregate any kind of rankings

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Efficient, robust and effective rank aggregation for massive biological datasets

A meta-approach for improving the prediction and the functional annotation of ortholog groups

Rank aggregation with ties: experiments and analysis

GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization

A meta-approach for improving the prediction and the functional annotation of ortholog groups

A new dichotomic algorithm for the uniform random generation of words in regular languages

Bounds on Autocorrelation Coefficients of Rudin-Shapiro Polynomials

An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure

Regulation of splicing enhancer activities by RNA secondary structures

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