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The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs

Nucleic acids research, 2015-03, Vol.43 (5), p.2638-2654

2015

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FoxO maintains a genuine muscle stem-cell quiescent state until geriatric age

Nature cell biology, 2020-11, Vol.22 (11), p.1307-1318

2020

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A computer-guided design tool to increase the efficiency of cellular conversions

Nature communications, 2021-03, Vol.12 (1), p.1659-1659, Article 1659

2021

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Measuring biological age using a functionally interpretable multi‐tissue RNA clock

Aging cell, 2023-05, Vol.22 (5), p.e13799-n/a

2023

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A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion

Nature communications, 2021-05, Vol.12 (1), p.3144-3144, Article 3144

2021

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A single cell-based computational platform to identify chemical compounds targeting desired sets of transcription factors for cellular conversion

Stem cell reports, 2023-01, Vol.18 (1), p.131-144

2023

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The Importance of Computational Modeling in Stem Cell Research

Trends in biotechnology (Regular ed.), 2021-02, Vol.39 (2), p.126-136

2021

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Pten regulates endocytic trafficking of cell adhesion and Wnt signaling molecules to pattern the retina

Cell reports (Cambridge), 2024-04, Vol.43 (4), p.114005-114005, Article 114005

2024

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A Generalized Gene-Regulatory Network Model of Stem Cell Differentiation for Predicting Lineage Specifiers

Stem cell reports, 2016-09, Vol.7 (3), p.307-315

2016

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The HAS-BLED Score Identifies Patients with Acute Venous Thromboembolism at High Risk of Major Bleeding Complications during the First Six Months of Anticoagulant Treatment

PloS one, 2015-04, Vol.10 (4), p.e0122520-e0122520

2015

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A Catalogus Immune Muris of the mouse immune responses to diverse pathogens

Cell death & disease, 2021-08, Vol.12 (9), p.798-798, Article 798

2021

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Magnetic resonance direct thrombus imaging differentiates acute recurrent ipsilateral deep vein thrombosis from residual thrombosis

Blood, 2014-07, Vol.124 (4), p.623-627

2014

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Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play

Journal of molecular biology, 2008-04, Vol.378 (1), p.1-11

2008

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Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects

Nature (London), 2019-08, Vol.572 (7767), p.120-124

2019

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Risk of thrombotic complications in influenza versus COVID‐19 hospitalized patients

Research and practice in thrombosis and haemostasis, 2021-03, Vol.5 (3), p.412-420

2021

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Automatic Methods for Predicting Functionally Important Residues

Journal of molecular biology, 2003-02, Vol.326 (4), p.1289-1302

2003

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Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy

Trends in biotechnology (Regular ed.), 2019-07, Vol.37 (7), p.687-696

2019

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A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities

Nucleic acids research, 2019-04, Vol.47 (7), p.3333-3343

2019

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Fostering experimental and computational synergy to modulate hyperinflammation

Trends in immunology, 2022-01, Vol.43 (1), p.4-7

2022

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Stemness of the hybrid Epithelial/Mesenchymal State in Breast Cancer and Its Association with Poor Survival

PloS one, 2015-05, Vol.10 (5), p.e0126522-e0126522

2015

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The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

Structure (London), 2009-08, Vol.17 (8), p.1042-1050

2009

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The modular organization of domain structures: insights into protein-protein binding

PLoS computational biology, 2007-12, Vol.3 (12), p.e239-e239

2007

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SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies

Bioinformatics, 2019-11, Vol.36 (6), p.1963-1965

2019

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ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells

Nucleic acids research, 2023-01, Vol.51 (D1), p.D877-D889

2023

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FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model

Briefings in bioinformatics, 2021-07, Vol.22 (4)

2021

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The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs

FoxO maintains a genuine muscle stem-cell quiescent state until geriatric age

A computer-guided design tool to increase the efficiency of cellular conversions

Measuring biological age using a functionally interpretable multi‐tissue RNA clock

A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion

A single cell-based computational platform to identify chemical compounds targeting desired sets of transcription factors for cellular conversion

The Importance of Computational Modeling in Stem Cell Research

Pten regulates endocytic trafficking of cell adhesion and Wnt signaling molecules to pattern the retina

A Generalized Gene-Regulatory Network Model of Stem Cell Differentiation for Predicting Lineage Specifiers

The HAS-BLED Score Identifies Patients with Acute Venous Thromboembolism at High Risk of Major Bleeding Complications during the First Six Months of Anticoagulant Treatment

A Catalogus Immune Muris of the mouse immune responses to diverse pathogens

Magnetic resonance direct thrombus imaging differentiates acute recurrent ipsilateral deep vein thrombosis from residual thrombosis

Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play

Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects

Risk of thrombotic complications in influenza versus COVID‐19 hospitalized patients

Automatic Methods for Predicting Functionally Important Residues

Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy

A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities

Fostering experimental and computational synergy to modulate hyperinflammation

Stemness of the hybrid Epithelial/Mesenchymal State in Breast Cancer and Its Association with Poor Survival

The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

The modular organization of domain structures: insights into protein-protein binding

SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies

ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells

FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model

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