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The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana

Nature protocols, 2011-01, Vol.6 (1), p.56-68

2011

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A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

Developmental cell, 2010-06, Vol.18 (6), p.1030-1040

2010

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Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type‐specific transcription factor networks

The Plant journal : for cell and molecular biology, 2018-04, Vol.94 (2), p.215-231

2018

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Histone variants and modifications in plant gene regulation

Current opinion in plant biology, 2011-04, Vol.14 (2), p.116-122

2011

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The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis

The Plant journal : for cell and molecular biology, 2019-07, Vol.99 (1), p.144-162

2019

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Evolutionary flexibility in flooding response circuitry in angiosperms

Science (American Association for the Advancement of Science), 2019-09, Vol.365 (6459), p.1291-1295

2019

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On the origin and evolutionary consequences of gene body DNA methylation

Proceedings of the National Academy of Sciences - PNAS, 2016-08, Vol.113 (32), p.9111-9116

2016

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Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome

PLoS genetics, 2019-08, Vol.15 (8), p.e1008326-e1008326

2019

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Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus

Molecular cell, 2015-01, Vol.57 (2), p.376-388

2015

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Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice

Developmental cell, 2022-05, Vol.57 (9), p.1177-1192.e6

2022

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Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

Genome research, 2012-04, Vol.22 (4), p.766-777

2012

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The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing

PLoS genetics, 2022-03, Vol.18 (3), p.e1009633-e1009633

2022

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A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate

Developmental cell, 2017-04, Vol.41 (2), p.204-220.e5

2017

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Histone Variants in the Specialization of Plant Chromatin

Annual review of plant biology, 2022-05, Vol.73 (1), p.149-172

2022

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Considerations in the analysis of plant chromatin accessibility data

Current opinion in plant biology, 2020-04, Vol.54, p.69-78

2020

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Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules

The Plant cell, 2018-01, Vol.30 (1), p.15-36

2018

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The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

The Plant cell, 2018-06, Vol.30 (6), p.1337-1352

2018

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Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model

Plant physiology (Bethesda), 2014-10, Vol.166 (2), p.455-469

2014

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Catching a glimpse of nucleosome dynamics

Cell cycle (Georgetown, Tex.), 2010-09, Vol.9 (17), p.3389-3390

2010

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Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z

The Plant cell, 2007-01, Vol.19 (1), p.74-83

2007

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Grand Challenge: Accelerating Discovery through Technology Development

Frontiers in plant science, 2011-01, Vol.2, p.41-41

Deal, Roger B

2011

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Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair

Developmental biology, 2009-11, Vol.335 (1), p.22-32

2009

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Capturing the dynamic epigenome

Genome biology, 2010-01, Vol.11 (10), p.218-218

2010

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Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence

The Plant journal : for cell and molecular biology, 2005-03, Vol.41 (6), p.845-858

2005

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The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana

A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type‐specific transcription factor networks

Histone variants and modifications in plant gene regulation

The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis

Evolutionary flexibility in flooding response circuitry in angiosperms

On the origin and evolutionary consequences of gene body DNA methylation

Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome

Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus

Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing

A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate

Histone Variants in the Specialization of Plant Chromatin

Considerations in the analysis of plant chromatin accessibility data

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model

Catching a glimpse of nucleosome dynamics

Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z

Innovation, conservation, and repurposing of gene function in root cell type development

Grand Challenge: Accelerating Discovery through Technology Development

Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair

Capturing the dynamic epigenome

Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence

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