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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W394-W399

2006

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Applied and Environmental Microbiology, 2006-07, Vol.72 (7), p.5069-5072

2006

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Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

Nature communications, 2020-03, Vol.11 (1), p.1512-1512, Article 1512

2020

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Loss of Bacterial Diversity during Antibiotic Treatment of Intubated Patients Colonized with Pseudomonas aeruginosa

Journal of Clinical Microbiology, 2007-06, Vol.45 (6), p.1954-1962

2007

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Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis

Indoor air, 2013-02, Vol.23 (1), p.50-61

2013

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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

Nucleic acids research, 2008-10, Vol.36 (18), p.e120-e120

2008

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Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA

Bioinformatics, 2003-08, Vol.19 (12), p.1461-1468

2003

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Sequence-specific identification of 18 pathogenic microorganisms using microarray technology

Molecular and cellular probes, 2002-04, Vol.16 (2), p.119-127

2002

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Microbial community structure of a slow sand filter schmutzdecke: a phylogenetic snapshot based on rRNA sequence analysis

Water science & technology. Water supply, 2011-01, Vol.11 (4), p.426-436

2011

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Development of a high‐volume aerosol collection system for the identification of air‐borne micro‐organisms

Letters in applied microbiology, 2002-03, Vol.34 (3), p.162-167

2002

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High-Density Microarray of Small-Subunit Ribosomal DNA Probes

Applied and Environmental Microbiology, 2002-05, Vol.68 (5), p.2535-2541

2002

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PyNAST: a flexible tool for aligning sequences to a template alignment

Bioinformatics, 2010-01, Vol.26 (2), p.266-267

2010

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Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray

FEMS microbiology letters, 2005-04, Vol.245 (2), p.271-278

2005

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PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

Applied and Environmental Microbiology, 2011-09, Vol.77 (18), p.6313-6322

2011

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Comprehensive aligned sequence constructionfor automated design of effective probes (CASCADE-P) using 16S rDNA

Bioinformatics, 2003-08, Vol.19 (12), p.1461-1468

2003

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Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis: Bacterial communities in commercial aircraft and outdoor air samples

Indoor air, 2013-02, Vol.23 (1), p.50-61

2013

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PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

Applied and environmental microbiology, 2011-09, Vol.77 (18)

2011

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Evaluation of 16S rDNA-based community profiling for human microbiome research

PloS one, 2012-06, Vol.7 (6), p.e39315-e39315

2012

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Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

PloS one, 2016-11, Vol.11 (11), p.e0166104-e0166104

2016

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Chronic kidney disease alters intestinal microbial flora

Kidney international, 2013-02, Vol.83 (2), p.308-315

2013

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Expansion of Urease- and Uricase-Containing, Indole- and p-Cresol-Forming and Contraction of Short-Chain Fatty Acid-Producing Intestinal Microbiota in ESRD

American journal of nephrology, 2014-01, Vol.39 (3), p.230-237

2014

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Genome research, 2011-03, Vol.21 (3), p.494-504

2011

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Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

Science (American Association for the Advancement of Science), 2011-05, Vol.332 (6033), p.1097-1100

2011

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Gut Microbiota in Multiple Sclerosis: Possible Influence of Immunomodulators

Journal of investigative medicine, 2015-06, Vol.63 (5), p.729-734

2015

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Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

The ISME Journal, 2012-01, Vol.6 (1), p.94-103

2012

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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

Loss of Bacterial Diversity during Antibiotic Treatment of Intubated Patients Colonized with Pseudomonas aeruginosa

Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology

Microbial community structure of a slow sand filter schmutzdecke: a phylogenetic snapshot based on rRNA sequence analysis

Development of a high‐volume aerosol collection system for the identification of air‐borne micro‐organisms

High-Density Microarray of Small-Subunit Ribosomal DNA Probes

PyNAST: a flexible tool for aligning sequences to a template alignment

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray

PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

Comprehensive aligned sequence constructionfor automated design of effective probes (CASCADE-P) using 16S rDNA

Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis: Bacterial communities in commercial aircraft and outdoor air samples

PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

Evaluation of 16S rDNA-based community profiling for human microbiome research

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Chronic kidney disease alters intestinal microbial flora

Expansion of Urease- and Uricase-Containing, Indole- and p-Cresol-Forming and Contraction of Short-Chain Fatty Acid-Producing Intestinal Microbiota in ESRD

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

Gut Microbiota in Multiple Sclerosis: Possible Influence of Immunomodulators

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

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