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DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Bioinformatics (Oxford, England), 2021-08, Vol.37 (15), p.2112-2120

2021

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ADAR1 Forms a Complex with Dicer to Promote MicroRNA Processing and RNA-Induced Gene Silencing

Cell, 2013-04, Vol.153 (3), p.575-589

2013

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Alternative transcription and alternative splicing in cancer

Pharmacology & therapeutics (Oxford), 2012-12, Vol.136 (3), p.283-294

2012

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Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle

Nature medicine, 2018-06, Vol.24 (6), p.770-781

2018

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Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques

Neuro-oncology (Charlottesville, Va.), 2016-03, Vol.18 (3), p.417-425

2016

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Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1, TSHR, and a Novel lincRNA Gene, PTCSC2

The journal of clinical endocrinology and metabolism, 2015-01, Vol.100 (1), p.E164-E172

2015

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polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (22), p.8646-8651

2012

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Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer

The Journal of clinical investigation, 2022-07, Vol.132 (14), p.1-14

2022

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Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

Cell reports (Cambridge), 2017-05, Vol.19 (9), p.1858-1873

2017

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Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Cancer research (Chicago, Ill.), 2010-04, Vol.70 (7), p.2789-2798

2010

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Immune landscapes associated with different glioblastoma molecular subtypes

Acta neuropathologica communications, 2019-11, Vol.7 (1), p.203-203, Article 203

2019

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Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates

Nature communications, 2021-01, Vol.12 (1), p.484-484, Article 484

2021

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Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

Genome research, 2011-08, Vol.21 (8), p.1260

2011

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A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection

The EMBO journal, 2012-11, Vol.31 (21), p.4165-4178

2012

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Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

Nature communications, 2017-01, Vol.8 (1), p.14286-12, Article 14286

2017

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miR-218 opposes a critical RTK-HIF pathway in mesenchymal glioblastoma

Proceedings of the National Academy of Sciences - PNAS, 2014-01, Vol.111 (1), p.291-296

2014

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AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

BMC bioinformatics, 2003-06, Vol.4 (1), p.25-25, Article 25

2003

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Protein kinase A activation enhances β-catenin transcriptional activity through nuclear localization to PML bodies

PloS one, 2014-10, Vol.9 (10), p.e109523

2014

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Computational identification of promoters and first exons in the human genome

Nature genetics, 2001-12, Vol.29 (4), p.412-417

2001

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Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Genome research, 2014-06, Vol.24 (6), p.1039

2014

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Genome-wide analysis of host-chromosome binding sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)

Virology journal, 2010-10, Vol.7 (1), p.262-262, Article 262

2010

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Identification of Host-Chromosome Binding Sites and Candidate Gene Targets for Kaposi's Sarcoma-Associated Herpesvirus LANA

Journal of Virology, 2012-05, Vol.86 (10), p.5752-5762

2012

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MicroRNA genes are frequently located near mouse cancer susceptibility loci

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (19), p.8017-8022

2007

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Direct coupling of the cell cycle and cell death machinery by E2F

Nature cell biology, 2002-11, Vol.4 (11), p.859-864

2002

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FTO-Dependent N 6 -Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16), p.3200-3214

2020

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DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

ADAR1 Forms a Complex with Dicer to Promote MicroRNA Processing and RNA-Induced Gene Silencing

Alternative transcription and alternative splicing in cancer

Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle

Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques

Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1, TSHR, and a Novel lincRNA Gene, PTCSC2

polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type

Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer

Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Immune landscapes associated with different glioblastoma molecular subtypes

Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

miR-218 opposes a critical RTK-HIF pathway in mesenchymal glioblastoma

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

Protein kinase A activation enhances β-catenin transcriptional activity through nuclear localization to PML bodies

Computational identification of promoters and first exons in the human genome

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Genome-wide analysis of host-chromosome binding sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)

Identification of Host-Chromosome Binding Sites and Candidate Gene Targets for Kaposi's Sarcoma-Associated Herpesvirus LANA

MicroRNA genes are frequently located near mouse cancer susceptibility loci

Direct coupling of the cell cycle and cell death machinery by E2F

FTO-Dependent N 6 -Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

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