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Deep learning in clinical natural language processing: a methodical review

Journal of the American Medical Informatics Association : JAMIA, 2020-03, Vol.27 (3), p.457-470

2020

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A frame semantic overview of NLP-based information extraction for cancer-related EHR notes

Journal of biomedical informatics, 2019-12, Vol.100, p.103301-103301, Article 103301

2019

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A dataset of chest X-ray reports annotated with Spatial Role Labeling annotations

Data in brief, 2020-10, Vol.32, p.106056-106056, Article 106056

2020

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Fine-grained spatial information extraction in radiology as two-turn question answering

International journal of medical informatics (Shannon, Ireland), 2022-02, Vol.158, p.104628-104628, Article 104628

2022

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quEHRy: a question answering system to query electronic health records

Journal of the American Medical Informatics Association : JAMIA, 2023-05, Vol.30 (6), p.1091-1102

2023

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Weakly supervised spatial relation extraction from radiology reports

JAMIA open, 2023-07, Vol.6 (2), p.ooad027-ooad027

2023

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Spatial Relation Extraction from Radiology Reports using Syntax-Aware Word Representations

AMIA Summits on Translational Science proceedings, 2020, Vol.2020, p.116-125

2020

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Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning

Journal of biomedical informatics, 2020-08, Vol.108, p.103473-103473, Article 103473

2020

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RadLex Normalization in Radiology Reports

AMIA ... Annual Symposium proceedings, 2020, Vol.2020, p.338-347

2020

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AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models

Journal of the American Medical Informatics Association : JAMIA, 2024-01, Vol.31 (2), p.375-385

2024

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Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping

AMIA Summits on Translational Science proceedings, 2021-05, Vol.2021, p.170-179

2021

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Plasma cathepsin L:A prognostic marker for pancreatic cancer

World journal of gastroenterology : WJG, 2014-12, Vol.20 (46), p.17532-17540

2014

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α-Synuclein aggregation nucleates through liquid-liquid phase separation

Nature chemistry, 2020-08, Vol.12 (8), p.705

2020

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COVID-19 and the Chemical Senses: Supporting Players Take Center Stage

Neuron (Cambridge, Mass.), 2020-07, Vol.107 (2), p.219-233

2020

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Co-aggregation and secondary nucleation in the life cycle of human prolactin/galanin functional amyloids

eLife, 2022-03, Vol.11

2022

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AMPK activation reduces cancer cell aggressiveness via inhibition of monoamine oxidase A (MAO-A) expression/activity

Life sciences (1973), 2024-09, Vol.352, p.122857, Article 122857

2024

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Optimising Electroporation Condition for CRISPR/Cas-Mediated Knockout in Zona-Intact Buffalo Zygotes

Animals (Basel), 2023-12, Vol.14 (1), p.134

2023

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Enhancing the quality of inferior oocytes of buffalo for in vitro embryo production: The impact of melatonin on maturation, SCNT, and epigenetic modifications

Tissue & cell, 2024-08, Vol.89, p.102480, Article 102480

2024

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Identification of perturbed pathways rendering susceptibility to tuberculosis in type 2 diabetes mellitus patients using BioNSi simulation of integrated networks of implicated human genes

Journal of biosciences, 2022-12, Vol.47 (4), Article 69

2022

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Comparison of Kinetics, Toxicity, Oligomer Formation, and Membrane Binding Capacity of α‑Synuclein Familial Mutations at the A53 Site, Including the Newly Discovered A53V Mutation

Biochemistry (Easton), 2018-09, Vol.57 (35), p.5183-5187

2018

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Direct Demonstration of Seed Size-Dependent α‑Synuclein Amyloid Amplification

The journal of physical chemistry letters, 2022-07, Vol.13 (28), p.6427-6438

2022

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α-Synuclein Aggregation Intermediates form Fibril Polymorphs with Distinct Prion-like Properties

Journal of molecular biology, 2022-10, Vol.434 (19), p.167761-167761, Article 167761

2022

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Progression of Chronic Pancreatitis to Pancreatic Cancer: Is There a Role of Gene Mutations as a Screening Tool?

Pancreas, 2018-02, Vol.47 (2), p.227-232

2018

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Integrated genomic view of SARS-CoV-2 in India

Wellcome open research, 2020, Vol.5, p.184-184

2020

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Membrane proteomic analysis reveals overlapping and independent functions of Streptococcus mutans Ffh, YidC1, and YidC2

Molecular oral microbiology, 2019-08, Vol.34 (4), p.131-152

2019

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Deep learning in clinical natural language processing: a methodical review

A frame semantic overview of NLP-based information extraction for cancer-related EHR notes

A dataset of chest X-ray reports annotated with Spatial Role Labeling annotations

Fine-grained spatial information extraction in radiology as two-turn question answering

quEHRy: a question answering system to query electronic health records

Weakly supervised spatial relation extraction from radiology reports

Spatial Relation Extraction from Radiology Reports using Syntax-Aware Word Representations

Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning

RadLex Normalization in Radiology Reports

AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models

Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping

Plasma cathepsin L:A prognostic marker for pancreatic cancer

α-Synuclein aggregation nucleates through liquid-liquid phase separation

COVID-19 and the Chemical Senses: Supporting Players Take Center Stage

Co-aggregation and secondary nucleation in the life cycle of human prolactin/galanin functional amyloids

AMPK activation reduces cancer cell aggressiveness via inhibition of monoamine oxidase A (MAO-A) expression/activity

Optimising Electroporation Condition for CRISPR/Cas-Mediated Knockout in Zona-Intact Buffalo Zygotes

Enhancing the quality of inferior oocytes of buffalo for in vitro embryo production: The impact of melatonin on maturation, SCNT, and epigenetic modifications

Identification of perturbed pathways rendering susceptibility to tuberculosis in type 2 diabetes mellitus patients using BioNSi simulation of integrated networks of implicated human genes

Comparison of Kinetics, Toxicity, Oligomer Formation, and Membrane Binding Capacity of α‑Synuclein Familial Mutations at the A53 Site, Including the Newly Discovered A53V Mutation

Direct Demonstration of Seed Size-Dependent α‑Synuclein Amyloid Amplification

α-Synuclein Aggregation Intermediates form Fibril Polymorphs with Distinct Prion-like Properties

Progression of Chronic Pancreatitis to Pancreatic Cancer: Is There a Role of Gene Mutations as a Screening Tool?

Integrated genomic view of SARS-CoV-2 in India

Membrane proteomic analysis reveals overlapping and independent functions of Streptococcus mutans Ffh, YidC1, and YidC2

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