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Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011816-e1011816

2024

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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models

PLoS computational biology, 2018-05, Vol.14 (5), p.e1006146-e1006146

2018

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Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI

PloS one, 2015-07, Vol.10 (7), p.e0133579-e0133579

2015

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Semantic particularity measure for functional characterization of gene sets using gene ontology

PloS one, 2014-01, Vol.9 (1), p.e86525-e86525

2014

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Improving reusability along the data life cycle: a regulatory circuits case study

Journal of biomedical semantics, 2022-03, Vol.13 (1), p.11-11, Article 11

2022

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The Longissimus and Semimembranosus muscles display marked differences in their gene expression profiles in pig

PloS one, 2014-05, Vol.9 (5), p.e96491-e96491

2014

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Measuring the evolution of ontology complexity: the gene ontology case study

PloS one, 2013-10, Vol.8 (10), p.e75993-e75993

2013

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Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies

Bioinformatics (Oxford, England), 2023-05, Vol.39 (5)

2023

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Towards a reproducible interactome: semantic-based detection of redundancies to unify protein–protein interaction databases

Bioinformatics, 2022-03, Vol.38 (6), p.1685-1691

2022

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queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.3203-3205

2019

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Formalizing and enriching phenotype signatures using Boolean networks

Journal of theoretical biology, 2019-04, Vol.467, p.66-79

2019

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Integration of miRNA‐regulatory networks in hepatic stellate cells identifies TIMP3 as a key factor in chronic liver disease

Liver international, 2020-08, Vol.40 (8), p.2021-2033

2020

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Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer

BMC medical informatics and decision making, 2014-04, Vol.14 (1), p.24-24, Article 24

2014

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La gestion de données médico-administratives grâce aux outils du Web sémantique

Revue d'épidémiologie et de santé publique, 2016-03, Vol.64, p.S15-S15

2016

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A Similarity Measure Based on Care Trajectories as Sequences of Sets

Artificial Intelligence in Medicine, 2017, Vol.10259, p.278-282

2017

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Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer's disease

Database : the journal of biological databases and curation, 2021-02, Vol.2021, p.1-33

2021

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genome‐scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

The Plant journal : for cell and molecular biology, 2014-10, Vol.80 (2), p.367-381

2014

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Converting Alzheimer’s Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data

Data Integration in the Life Sciences, p.207-215

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Personalized and automated remote monitoring of atrial fibrillation

Europace (London, England), 2016-03, Vol.18 (3), p.347-352

2016

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Interoperable Infrastructure and Implementation of a Health Data Model for Remote Monitoring of Chronic Diseases with Comorbidities

Ingénierie et recherche biomédicale, 2018-06, Vol.39 (3), p.151-159

2018

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A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

Journal of the American Medical Informatics Association : JAMIA, 2013-09, Vol.20 (5), p.986-994

2013

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Ontology for assessment studies of human–computer-interaction in surgery

Artificial intelligence in medicine, 2015-02, Vol.63 (2), p.73-84

2015

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Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI: e0133579

PloS one, 2015-07, Vol.10 (7)

2015

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GO2PUB: Querying PubMed with semantic expansion of gene ontology terms

Journal of biomedical semantics, 2012-09, Vol.3 (1), p.7-7

2012

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Semantic Particularity Measure for Functional Characterization of Gene Sets Using Gene Ontology: e86525

PloS one, 2014-01, Vol.9 (1)

2014

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Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models

Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI

Semantic particularity measure for functional characterization of gene sets using gene ontology

Improving reusability along the data life cycle: a regulatory circuits case study

The Longissimus and Semimembranosus muscles display marked differences in their gene expression profiles in pig

Measuring the evolution of ontology complexity: the gene ontology case study

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein–protein interaction databases

queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data

Formalizing and enriching phenotype signatures using Boolean networks

Integration of miRNA‐regulatory networks in hepatic stellate cells identifies TIMP3 as a key factor in chronic liver disease

Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer

La gestion de données médico-administratives grâce aux outils du Web sémantique

A Similarity Measure Based on Care Trajectories as Sequences of Sets

Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer's disease

genome‐scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

Converting Alzheimer’s Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data

Personalized and automated remote monitoring of atrial fibrillation

Interoperable Infrastructure and Implementation of a Health Data Model for Remote Monitoring of Chronic Diseases with Comorbidities

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

Ontology for assessment studies of human–computer-interaction in surgery

Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI: e0133579

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms

Semantic Particularity Measure for Functional Characterization of Gene Sets Using Gene Ontology: e86525

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