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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

Bioinformatics, 2018-07, Vol.34 (14), p.2499-2502

2018

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FAK signaling in human cancer as a target for therapeutics

Pharmacology & therapeutics (Oxford), 2015-02, Vol.146, p.132-149

2015

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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Briefings in bioinformatics, 2020-05, Vol.21 (3), p.1047-1057

2020

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Dual-specificity phosphatases: critical regulators with diverse cellular targets

Biochemical journal, 2009-03, Vol.418 (3), p.475-489

2009

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Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome

Bioinformatics, 2018-12, Vol.34 (24), p.4223-4231

2018

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Cortactin signalling and dynamic actin networks

Biochemical journal, 2004-08, Vol.382 (Pt 1), p.13-25

Daly, Roger J

2004

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The kinome 'at large' in cancer

Nature reviews. Cancer, 2016-02, Vol.16 (2), p.83

2016

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Function, regulation and pathological roles of the Gab/DOS docking proteins

Cell communication and signaling, 2009-09, Vol.7 (1), p.22-22, Article 22

2009

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A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties

Biochemical journal, 2014-01, Vol.457 (2), p.323-334

2014

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Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment[S]

Molecular & cellular proteomics, 2019-07, Vol.18 (7), p.1410-1427

2019

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PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

Scientific reports, 2017-07, Vol.7 (1), p.6862-19, Article 6862

2017

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PTP1B Is an Intracellular Checkpoint that Limits T-cell and CAR T-cell Antitumor Immunity

Cancer discovery, 2022-03, Vol.12 (3), p.752-773

2022

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Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods

Briefings in bioinformatics, 2019-11, Vol.20 (6), p.2150-2166

2019

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Proteome‐based molecular subtyping and therapeutic target prediction in gastric cancer

Molecular oncology, 2024-06, Vol.18 (6), p.1437-1459

2024

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Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification

Bioinformatics (Oxford, England), 2023-03, Vol.39 (3)

2023

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Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium

Cell stem cell, 2020-10, Vol.27 (4), p.646-662.e7

2020

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HEAL: an automated deep learning framework for cancer histopathology image analysis

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4291-4295

2021

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AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network

Nature communications, 2020-07, Vol.11 (1), p.3586-3586, Article 3586

2020

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INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer

Nature communications, 2021-05, Vol.12 (1), p.3140-3140, Article 3140

2021

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Temporal regulation of EGF signalling networks by the scaffold protein Shc1

Nature (London), 2013-07, Vol.499 (7457), p.166-171

2013

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CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies

Genome Biology, 2021-01, Vol.22 (1), p.47-47, Article 47

2021

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Structural mapping of PEAK pseudokinase interactions identifies 14-3-3 as a molecular switch for PEAK3 signaling

Nature communications, 2023-06, Vol.14 (1), p.3542-3542, Article 3542

2023

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Global ubiquitinome profiling identifies NEDD4 as a regulator of Profilin 1 and actin remodelling in neural crest cells

Nature communications, 2022-04, Vol.13 (1), p.2018-2018, Article 2018

2022

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Effect of FAK inhibitor VS‐6063 (defactinib) on docetaxel efficacy in prostate cancer

The Prostate, 2018-03, Vol.78 (4), p.308-317

2018

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CDK8 and CDK19 regulate intestinal differentiation and homeostasis via the chromatin remodeling complex SWI/SNF

The Journal of clinical investigation, 2022-10, Vol.132 (20), p.1-14

2022

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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

FAK signaling in human cancer as a target for therapeutics

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Dual-specificity phosphatases: critical regulators with diverse cellular targets

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome

Cortactin signalling and dynamic actin networks

The kinome 'at large' in cancer

Function, regulation and pathological roles of the Gab/DOS docking proteins

A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties

Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment[S]

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

PTP1B Is an Intracellular Checkpoint that Limits T-cell and CAR T-cell Antitumor Immunity

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods

Proteome‐based molecular subtyping and therapeutic target prediction in gastric cancer

Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification

Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium

HEAL: an automated deep learning framework for cancer histopathology image analysis

AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network

INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer

Temporal regulation of EGF signalling networks by the scaffold protein Shc1

CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies

Structural mapping of PEAK pseudokinase interactions identifies 14-3-3 as a molecular switch for PEAK3 signaling

Global ubiquitinome profiling identifies NEDD4 as a regulator of Profilin 1 and actin remodelling in neural crest cells

Effect of FAK inhibitor VS‐6063 (defactinib) on docetaxel efficacy in prostate cancer

CDK8 and CDK19 regulate intestinal differentiation and homeostasis via the chromatin remodeling complex SWI/SNF

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