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Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

Nature communications, 2018-04, Vol.9 (1), p.1462-10, Article 1462

2018

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Performance comparison of benchtop high-throughput sequencing platforms

Nature biotechnology, 2012-05, Vol.30 (5), p.434-439

2012

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Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

PLoS genetics, 2020-06, Vol.16 (6), p.e1008850

2020

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Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak

International journal of food microbiology, 2018-06, Vol.274, p.1-11

2018

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Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

Scientific reports, 2018-05, Vol.8 (1), p.7389-8, Article 7389

2018

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Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

PLoS neglected tropical diseases, 2019-09, Vol.13 (9), p.e0007620-e0007620

2019

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Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences

Journal of clinical microbiology, 2017-02, Vol.55 (2), p.616-623

2017

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Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

Genome Biology, 2015-05, Vol.16 (1), p.114-114, Article 114

2015

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Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh

PloS one, 2020-01, Vol.15 (1), p.e0228250-e0228250

2020

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Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing Escherichia coli serogroup O157:H7, England, 2013 to 2017

Euro surveillance : bulletin européen sur les maladies transmissibles, 2019-01, Vol.24 (4), p.1

2019

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Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica

Frontiers in microbiology, 2018-03, Vol.9, p.592-592

2018

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Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

Journal of clinical microbiology, 2015-11, Vol.53 (11), p.3565-3573

2015

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Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Nature communications, 2021-05, Vol.12 (1), p.2684-2684, Article 2684

2021

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Development and validation of a random forest algorithm for source attribution of animal and human Salmonella Typhimurium and monophasic variants of S. Typhimurium isolates in England and Wales utilising whole genome sequencing data

Frontiers in microbiology, 2024-03, Vol.14, p.1254860-1254860

2024

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Inspection of chicken wings and legs for animal welfare monitoring using X-ray computed tomography, visual examination, and histopathology

Poultry science, 2024-03, Vol.103 (3), p.103403-103403, Article 103403

2024

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Emergence of phylogenetically diverse and fluoroquinolone resistant Salmonella Enteritidis as a cause of invasive nontyphoidal Salmonella disease in Ghana

PLoS neglected tropical diseases, 2019-06, Vol.13 (6), p.e0007485-e0007485

2019

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Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Journal of clinical microbiology, 2020-03, Vol.58 (4)

2020

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Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing

Journal of clinical microbiology, 2018-03, Vol.56 (3)

2018

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Emergence of novel strains of Shigella flexneri associated with sexual transmission in adult men in England, 2019–2020

Journal of medical microbiology, 2021-01, Vol.70 (10)

2021

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Evaluation of Molecular Methods for Serotyping Shigella flexneri

Journal of clinical microbiology, 2016-06, Vol.54 (6), p.1456-1461

2016

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Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157

Clinical infectious diseases, 2015-08, Vol.61 (3), p.305-312

2015

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Epidemiological analysis of Salmonella clusters identified by whole genome sequencing, England and Wales 2014

Food microbiology, 2018-05, Vol.71, p.39-45

2018

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Highly Pathogenic Clone of Shiga Toxin-Producing Escherichia coli O157:H7, England and Wales

Emerging infectious diseases, 2018-12, Vol.24 (12), p.2303-2308

2018

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Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (40), p.11312-11317

2016

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Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

Performance comparison of benchtop high-throughput sequencing platforms

Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak

Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences

Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh

Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing Escherichia coli serogroup O157:H7, England, 2013 to 2017

Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Development and validation of a random forest algorithm for source attribution of animal and human Salmonella Typhimurium and monophasic variants of S. Typhimurium isolates in England and Wales utilising whole genome sequencing data

Inspection of chicken wings and legs for animal welfare monitoring using X-ray computed tomography, visual examination, and histopathology

Emergence of phylogenetically diverse and fluoroquinolone resistant Salmonella Enteritidis as a cause of invasive nontyphoidal Salmonella disease in Ghana

Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing

Emergence of novel strains of Shigella flexneri associated with sexual transmission in adult men in England, 2019–2020

Evaluation of Molecular Methods for Serotyping Shigella flexneri

Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157

Epidemiological analysis of Salmonella clusters identified by whole genome sequencing, England and Wales 2014

Highly Pathogenic Clone of Shiga Toxin-Producing Escherichia coli O157:H7, England and Wales

Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates

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