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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D26-D31

2014

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Rice SNP-seek database update: new SNPs, indels, and queries

Nucleic acids research, 2017-01, Vol.45 (D1), p.D1075-D1081

2017

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Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks

PLoS computational biology, 2005-10, Vol.1 (5), p.e55-e55

2005

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Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors

Cell, 2008-12, Vol.135 (6), p.1053-1064

2008

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GenomeVISTA--an integrated software package for whole-genome alignment and visualization

Bioinformatics (Oxford, England), 2014-09, Vol.30 (18), p.2654-2655

2014

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MicrobesOnline: an integrated portal for comparative and functional genomics

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D396-D400

2010

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AVID: A global alignment program

Genome research, 2003-01, Vol.13 (1), p.97-102

2003

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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D111-D118

2010

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Alignathon: a competitive assessment of whole-genome alignment methods

Genome research, 2014-12, Vol.24 (12), p.2077-2089

2014

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Glocal alignment: finding rearrangements during alignment

Bioinformatics, 2003-07, Vol.19 (suppl-1), p.i54-i62

2003

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The MicrobesOnline Web site for comparative genomics

Genome research, 2005-07, Vol.15 (7), p.1015-1022

2005

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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

Journal of Bacteriology, 2009-01, Vol.191 (1), p.65-73

2009

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Comparative Genomics of Regulation of Fatty Acid and Branched-Chain Amino Acid Utilization in Proteobacteria

Journal of Bacteriology, 2009-01, Vol.191 (1), p.52-64

2009

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Multiple whole-genome alignments without a reference organism

Genome Research, 2009-04, Vol.19 (4), p.682-689

2009

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RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

BMC genomics, 2013-04, Vol.14 (1), p.213-213, Article 213

2013

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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

BMC genomics, 2011-06, Vol.12 Suppl 1 (Suppl 1), p.S3-S3

2011

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A cis-Regulatory Signature in Ascidians and Flies, Independent of Transcription Factor Binding Sites

Current biology, 2010-05, Vol.20 (9), p.792-802

2010

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Comparative Genomics of the Dormancy Regulons in Mycobacteria

Journal of Bacteriology, 2011-07, Vol.193 (14), p.3446-3452

2011

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Strategies and tools for whole-genome alignments

Genome research, 2003-01, Vol.13 (1), p.73-80

2003

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Active conservation of noncoding sequences revealed by three-way species comparisons

Genome research, 2000-09, Vol.10 (9), p.1304-1306

2000

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A computational approach to identify genes for functional RNAs in genomic sequences

Nucleic acids research, 2001-10, Vol.29 (19), p.3928-3938

2001

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Characterization of evolutionary rates and constraints in three Mammalian genomes

Genome research, 2004-04, Vol.14 (4), p.539-548

2004

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New Family of Tungstate-Responsive Transcriptional Regulators in Sulfate-Reducing Bacteria

Journal of Bacteriology, 2013-10, Vol.195 (19), p.4466-4475

2013

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Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes

Journal of Bacteriology, 2013-01, Vol.195 (1), p.29-38

2013

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Gene Expression Patterns Define Key Transcriptional Events in Cell-Cycle Regulation by cAMP and Protein Kinase A

Proceedings of the National Academy of Sciences - PNAS, 2005-06, Vol.102 (24), p.8561-8566

2005

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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

Rice SNP-seek database update: new SNPs, indels, and queries

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks

Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors

GenomeVISTA--an integrated software package for whole-genome alignment and visualization

MicrobesOnline: an integrated portal for comparative and functional genomics

AVID: A global alignment program

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

Alignathon: a competitive assessment of whole-genome alignment methods

Glocal alignment: finding rearrangements during alignment

The MicrobesOnline Web site for comparative genomics

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

Comparative Genomics of Regulation of Fatty Acid and Branched-Chain Amino Acid Utilization in Proteobacteria

Multiple whole-genome alignments without a reference organism

RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

A cis-Regulatory Signature in Ascidians and Flies, Independent of Transcription Factor Binding Sites

Comparative Genomics of the Dormancy Regulons in Mycobacteria

Strategies and tools for whole-genome alignments

Active conservation of noncoding sequences revealed by three-way species comparisons

A computational approach to identify genes for functional RNAs in genomic sequences

Characterization of evolutionary rates and constraints in three Mammalian genomes

New Family of Tungstate-Responsive Transcriptional Regulators in Sulfate-Reducing Bacteria

Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes

Gene Expression Patterns Define Key Transcriptional Events in Cell-Cycle Regulation by cAMP and Protein Kinase A

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