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Pathway-based personalized analysis of cancer

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (16), p.6388-6393

2013

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Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

BMC genomics, 2006-06, Vol.7 (1), p.133-133, Article 133

2006

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Thousands of Samples Are Needed to Generate a Robust Gene List for Predicting Outcome in Cancer

Proceedings of the National Academy of Sciences - PNAS, 2006-04, Vol.103 (15), p.5923-5928

2006

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Down-regulation of LATS kinases alters p53 to promote cell migration

Genes & development, 2015-11, Vol.29 (22), p.2325-2330

2015

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Aberrant transcriptional and post-transcriptional regulation of SPAG5, a YAP-TAZ-TEAD downstream effector, fuels breast cancer cell proliferation

Cell death and differentiation, 2021-05, Vol.28 (5), p.1493-1511

2021

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Positional distribution of human transcription factor binding sites

Nucleic acids research, 2008-12, Vol.36 (21), p.6795

2008

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c-Met activation leads to the establishment of a TGFβ-receptor regulatory network in bladder cancer progression

Nature communications, 2019-09, Vol.10 (1), p.4349-19, Article 4349

2019

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Do two machine-learning based prognostic signatures for breast cancer capture the same biological processes?

PloS one, 2011-03, Vol.6 (3), p.e17795-e17795

2011

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Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer

Proceedings of the National Academy of Sciences - PNAS, 2009-04, Vol.106 (17), p.7131-7136

2009

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Coupled Two-Way Clustering Analysis of Gene Microarray Data

Proceedings of the National Academy of Sciences - PNAS, 2000-10, Vol.97 (22), p.12079-12084

2000

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A Distinctive DNA Damage Response in Human Hematopoietic Stem Cells Reveals an Apoptosis-Independent Role for p53 in Self-Renewal

Cell stem cell, 2010-08, Vol.7 (2), p.186-197

2010

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Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

Bioinformatics, 2005-03, Vol.21 (5), p.650-659

2005

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Stem Cell–Related “Self-Renewal” Signature and High Epidermal Growth Factor Receptor Expression Associated With Resistance to Concomitant Chemoradiotherapy in Glioblastoma

Journal of clinical oncology, 2008-06, Vol.26 (18), p.3015-3024

2008

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PML, YAP, and p73 Are Components of a Proapoptotic Autoregulatory Feedback Loop

Molecular cell, 2008-12, Vol.32 (6), p.803-814

2008

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Using high-throughput transcriptomic data for prognosis: a critical overview and perspectives

Cancer research (Chicago, Ill.), 2014-09, Vol.74 (17), p.4612-4621

Domany, Eytan

2014

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BMP-mediated inhibition of FGF signaling promotes cardiomyocyte differentiation of anterior heart field progenitors

Development (Cambridge), 2010-09, Vol.137 (18), p.2989-3000

2010

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mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

BMC genomics, 2018-05, Vol.19 (1), p.419-419, Article 419

2018

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Resampling Method for Unsupervised Estimation of Cluster Validity

Neural computation, 2001-11, Vol.13 (11), p.2573-2593

2001

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EGR1 and the ERK‐ERF axis drive mammary cell migration in response to EGF

The FASEB journal, 2012-04, Vol.26 (4), p.1582-1592

2012

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Expression of L1-CAM and ADAM10 in human colon cancer cells induces metastasis

Cancer research (Chicago, Ill.), 2007-08, Vol.67 (16), p.7703-7712

2007

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Two Phases of Mitogenic Signaling Unveil Roles for p53 and EGR1 in Elimination of Inconsistent Growth Signals

Molecular cell, 2011-05, Vol.42 (4), p.524-535

2011

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DNA microarrays identification of primary and secondary target genes regulated by p53

Oncogene, 2001-04, Vol.20 (18), p.2225-2234

2001

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Senescent cells in growing tumors: population dynamics and cancer stem cells

PLoS computational biology, 2012-01, Vol.8 (1), p.e1002316-e1002316

2012

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Identification of novel DNA-damage tolerance genes reveals regulation of translesion DNA synthesis by nucleophosmin

Nature communications, 2014-11, Vol.5 (1), p.5437-5437, Article 5437

2014

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c-Kit Is Suppressed in Human Colon Cancer Tissue and Contributes to L1-Mediated Metastasis

Cancer research (Chicago, Ill.), 2013-09, Vol.73 (18), p.5754-5763

2013

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Pathway-based personalized analysis of cancer

Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

Thousands of Samples Are Needed to Generate a Robust Gene List for Predicting Outcome in Cancer

Down-regulation of LATS kinases alters p53 to promote cell migration

Aberrant transcriptional and post-transcriptional regulation of SPAG5, a YAP-TAZ-TEAD downstream effector, fuels breast cancer cell proliferation

Positional distribution of human transcription factor binding sites

c-Met activation leads to the establishment of a TGFβ-receptor regulatory network in bladder cancer progression

Do two machine-learning based prognostic signatures for breast cancer capture the same biological processes?

Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer

Coupled Two-Way Clustering Analysis of Gene Microarray Data

A Distinctive DNA Damage Response in Human Hematopoietic Stem Cells Reveals an Apoptosis-Independent Role for p53 in Self-Renewal

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

Stem Cell–Related “Self-Renewal” Signature and High Epidermal Growth Factor Receptor Expression Associated With Resistance to Concomitant Chemoradiotherapy in Glioblastoma

PML, YAP, and p73 Are Components of a Proapoptotic Autoregulatory Feedback Loop

Using high-throughput transcriptomic data for prognosis: a critical overview and perspectives

BMP-mediated inhibition of FGF signaling promotes cardiomyocyte differentiation of anterior heart field progenitors

mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

Resampling Method for Unsupervised Estimation of Cluster Validity

EGR1 and the ERK‐ERF axis drive mammary cell migration in response to EGF

Expression of L1-CAM and ADAM10 in human colon cancer cells induces metastasis

Two Phases of Mitogenic Signaling Unveil Roles for p53 and EGR1 in Elimination of Inconsistent Growth Signals

DNA microarrays identification of primary and secondary target genes regulated by p53

Senescent cells in growing tumors: population dynamics and cancer stem cells

Identification of novel DNA-damage tolerance genes reveals regulation of translesion DNA synthesis by nucleophosmin

c-Kit Is Suppressed in Human Colon Cancer Tissue and Contributes to L1-Mediated Metastasis

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