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Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry

Nature communications, 2022-05, Vol.13 (1), p.2424-12, Article 2424

2022

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Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA

Nucleic acids research, 2018-09, Vol.46 (15), p.7989-7997

2018

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A comprehensive classification and nomenclature of carboxyl–carboxyl(ate) supramolecular motifs and related catemers: implications for biomolecular systems

Acta crystallographica Section B, Structural science, crystal engineering and materials, 2015-04, Vol.71 (2), p.164-175

2015

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Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops

RNA (Cambridge), 2017-03, Vol.23 (3), p.259-269

2017

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Binding of metals to purine N7 nitrogen atoms and implications for nucleic acids: A CSD survey

Inorganica Chimica Acta, 2016-10, Vol.452, p.82-89

2016

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Anions in Nucleic Acid Crystallography

Methods in molecular biology (Clifton, N.J.), 2016, Vol.1320, p.337

2016

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Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability

mAbs, 2024, Vol.16 (1), p.2309685-2309685

2024

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106 Ion-π interactions in biomolecular systems

Journal of biomolecular structure & dynamics, 2015-05, Vol.33 (sup1), p.67-67

2015

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Mg2+ ions: do they bind to nucleobase nitrogens?

Nucleic acids research, 2017-01, Vol.45 (2), p.987

2017

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Sodium and Potassium Interactions with Nucleic Acids

Metal ions in life sciences, 2016, Vol.16, p.167-201

2016

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105 Stabilization effects induced by modified nucleotides in tRNA T-loop motifs

Journal of biomolecular structure & dynamics, 2015-05, Vol.33 (sup1), p.66-66

2015

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Deflating the RNA Mg2+ bubble: stereochemistry to the rescue

RNA (Cambridge), 2021-03, Vol.27 (3), p.243-252

2021

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Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey

RNA (Cambridge), 2019-02, Vol.25 (2), p.173-192

2019

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Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Angewandte Chemie International Edition, 2020-09, Vol.59 (38), p.16553-16560

International ed. in English, 2020

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Deflating the RNA Mg 2+ bubble: stereochemistry to the rescue

RNA (Cambridge), 2021-03, Vol.27 (3), p.243-252

2021

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Deflating the RNA Mg$^{2+}$ bubble: stereochemistry to the rescue

RNA (Cambridge), 2021, Vol.27 (3), p.243-252

2021

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Expanding Mass Spectrometry Toolbox for RNA Modification Profiling

Biophysical journal, 2020-02, Vol.118 (3), p.548a-548a

2020

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'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response

Nucleic acids research, 2016-07, Vol.44 (12), p.5944-5956

2016

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Pytheas: A Software to Map RNA Modifications via Tandem Mass Spectrometry

Biophysical journal, 2019-02, Vol.116 (3), p.287a-287a

2019

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Nucleobase carbonyl groups are poor Mg 2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey

RNA (Cambridge), 2019-02, Vol.25 (2), p.173-192

2019

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Nucleobase carbonyl groups are poor Mg$^{2+}$; monovalent ions; ribozyme; ribosome; lanthanides inner-sphere binders but excellent monovalent ion binders—a critical PDB survey

RNA (Cambridge), 2019, Vol.25 (2), p.173-192

2019

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Mg 2+ ions: do they bind to nucleobase nitrogens?

Nucleic acids research, 2017-01, Vol.45 (2), p.987-1004

2017

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Deflating the RNA Mg 2+ bubble. Stereochemistry to the rescue

RNA (Cambridge), 2020-12

2020

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Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Angewandte Chemie, 2020-09, Vol.132 (38), p.16696-16703

2020

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Complete revascularization reduces cardiovascular death in patients with ST-segment elevation myocardial infarction and multivessel disease: systematic review and meta-analysis of randomized clinical trials

European heart journal, 2020-11, Vol.41 (42), p.4103-4110

2020

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Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry

Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA

A comprehensive classification and nomenclature of carboxyl–carboxyl(ate) supramolecular motifs and related catemers: implications for biomolecular systems

Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops

Binding of metals to purine N7 nitrogen atoms and implications for nucleic acids: A CSD survey

Anions in Nucleic Acid Crystallography

Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability

106 Ion-π interactions in biomolecular systems

Mg2+ ions: do they bind to nucleobase nitrogens?

Sodium and Potassium Interactions with Nucleic Acids

105 Stabilization effects induced by modified nucleotides in tRNA T-loop motifs

Deflating the RNA Mg2+ bubble: stereochemistry to the rescue

Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey

Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Deflating the RNA Mg 2+ bubble: stereochemistry to the rescue

Deflating the RNA Mg$^{2+}$ bubble: stereochemistry to the rescue

Expanding Mass Spectrometry Toolbox for RNA Modification Profiling

'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response

Pytheas: A Software to Map RNA Modifications via Tandem Mass Spectrometry

Nucleobase carbonyl groups are poor Mg 2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey

Nucleobase carbonyl groups are poor Mg$^{2+}$; monovalent ions; ribozyme; ribosome; lanthanides inner-sphere binders but excellent monovalent ion binders—a critical PDB survey

Mg 2+ ions: do they bind to nucleobase nitrogens?

Deflating the RNA Mg 2+ bubble. Stereochemistry to the rescue

Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Complete revascularization reduces cardiovascular death in patients with ST-segment elevation myocardial infarction and multivessel disease: systematic review and meta-analysis of randomized clinical trials

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