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Evolution and Functional Diversification of MIRNA Genes

The Plant cell, 2011-02, Vol.23 (2), p.431-442

2011

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Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana

The Plant cell, 2019-05, Vol.31 (5), p.993-1011

2019

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Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences

Genome research, 2017-12, Vol.27 (12), p.2015-2024

2017

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The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution

Nature communications, 2021-06, Vol.12 (1), p.3334-3334, Article 3334

2021

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New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis

Plant physiology (Bethesda), 2014-05, Vol.165 (1), p.15-29

2014

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Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

The Plant cell, 2012-09, Vol.24 (9), p.3613-3629

2012

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Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

Nature structural & molecular biology, 2010-08, Vol.17 (8), p.997-1003

2010

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Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

Cell, 2008-04, Vol.133 (1), p.128-141

2008

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Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability

Nature communications, 2024-07, Vol.15 (1), p.5868-21, Article 5868

2024

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Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences

Genome Biology, 2021-10, Vol.22 (1), p.293-293, Article 293

2021

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Single-cell genomics in plants: current state, future directions, and hurdles to overcome

Plant physiology (Bethesda), 2022-02, Vol.188 (2), p.749-755

Cuperus, Josh T

2022

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Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

Proceedings of the National Academy of Sciences - PNAS, 2010-01, Vol.107 (1), p.466-471

2010

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Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

PloS one, 2013-10, Vol.8 (10), p.e77181-e77181

2013

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Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast

Cell reports (Cambridge), 2023-03, Vol.42 (3), p.112161-112161, Article 112161

2023

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Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves[OPEN]

The Plant cell, 2020-07, Vol.32 (7), p.2120-2131

2020

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Frontiers and techniques in plant gene regulation

Current opinion in plant biology, 2023-10, Vol.75, p.102403-102403, Article 102403

2023

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A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana

The Plant cell, 2021-08, Vol.33 (7), p.2197-2220

2021

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Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron

RNA (Cambridge), 2024-01, Vol.30 (1), p.52-67

2024

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Editorial overview: Technology development as a driver of biological discovery

Current opinion in plant biology, 2020-04, Vol.54, p.A1-A4

2020

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Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans

Genetics (Austin), 2023-05, Vol.224 (1)

2023

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Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

Nature plants, 2021-06, Vol.7 (6), p.842

2021

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The promise of single-cell genomics in plants

Current opinion in plant biology, 2020-04, Vol.54, p.114-121

2020

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Identification of genes required for de novo DNA methylation in Arabidopsis

Epigenetics, 2011-03, Vol.6 (3), p.344-354

2011

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Plant enhancers exhibit both cooperative and additive interactions among their functional elements

The Plant cell, 2024-07, Vol.36 (7), p.2570-2586

2024

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AGO1 and HSP90 buffer different genetic variants in Arabidopsis thaliana

Genetics (Austin), 2023-02, Vol.223 (2)

2023

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Evolution and Functional Diversification of MIRNA Genes

Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana

Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences

The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution

New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability

Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences

Single-cell genomics in plants: current state, future directions, and hurdles to overcome

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast

Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves[OPEN]

Frontiers and techniques in plant gene regulation

A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana

Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron

Editorial overview: Technology development as a driver of biological discovery

Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

The promise of single-cell genomics in plants

Identification of genes required for de novo DNA methylation in Arabidopsis

Plant enhancers exhibit both cooperative and additive interactions among their functional elements

AGO1 and HSP90 buffer different genetic variants in Arabidopsis thaliana

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