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Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria

The ISME Journal, 2020-07, Vol.14 (7), p.1783-1794

2020

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Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts

mBio, 2020-01, Vol.11 (1), p.e03129-19

2020

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Chemical Evolution of a Bacterium's Genome

Angewandte Chemie (International ed.), 2011-07, Vol.50 (31), p.7109-7114

International ed. in English, 2011

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Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

BMC genomics, 2015-12, Vol.16 (1094), p.1098-1098, Article 1098

2015

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MaGe: a microbial genome annotation system supported by synteny results

Nucleic acids research, 2006-01, Vol.34 (1), p.53

2006

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The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

The ISME Journal, 2012-01, Vol.6 (1), p.136-145

2012

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Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia

PloS one, 2022-06, Vol.17 (6), p.e0269405-e0269405

2022

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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

PLoS genetics, 2009-01, Vol.5 (1), p.e1000344-e1000344

2009

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Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

Science (American Association for the Advancement of Science), 2007-06, Vol.316 (5829), p.1307-1312

2007

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The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food

International journal of food microbiology, 2018-02, Vol.266, p.346-354

2018

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Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

Nucleic acids research, 2004-01, Vol.32 (19), p.5766

2004

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Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009687-e1009687

2021

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Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids

mSphere, 2019-06, Vol.4 (3)

2019

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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

Nucleic acids research, 2017-01, Vol.45 (D1), p.D517

2017

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Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Molecular biology and evolution, 2015-11, Vol.32 (11), p.2897-2904

2015

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Conservation and diversity of the IrrE/DdrO‐controlled radiation response in radiation‐resistant Deinococcus bacteria

MicrobiologyOpen (Weinheim), 2017-08, Vol.6 (4), p.477-n/a

2017

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Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

Genome research, 2005-10, Vol.15 (10), p.1325

2005

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RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti

Genome biology and evolution, 2014-04, Vol.6 (4), p.932-948

2014

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732

2020

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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

Genome Research, 2007-01, Vol.17 (1), p.7-15

2007

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Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain

Antimicrobial Agents and Chemotherapy, 2011-03, Vol.55 (3), p.1270-1273

2011

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Author Correction: Parallels between experimental and natural evolution of legume symbionts

Nature communications, 2018-11, Vol.9 (1), p.4641-1, Article 4641

2018

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MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D636

2013

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Tempo and mode of genome evolution in a 50,000-generation experiment

Nature (London), 2016-08, Vol.536 (7615), p.165-170

2016

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Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria

Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts

Chemical Evolution of a Bacterium's Genome

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

MaGe: a microbial genome annotation system supported by synteny results

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Conservation and diversity of the IrrE/DdrO‐controlled radiation response in radiation‐resistant Deinococcus bacteria

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain

Author Correction: Parallels between experimental and natural evolution of legume symbionts

MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

Tempo and mode of genome evolution in a 50,000-generation experiment

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