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The lasting after-effects of an ancient polyploidy on the genomes of teleosts

PloS one, 2020-04, Vol.15 (4), p.e0231356-e0231356

2020

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POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes

BMC bioinformatics, 2023-04, Vol.24 (1), p.1-174, Article 174

2023

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Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy

Molecular biology and evolution, 2014-12, Vol.31 (12), p.3184-3193

Conant, Gavin C

2014

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GenomeVx: simple web-based creation of editable circular chromosome maps

Bioinformatics, 2008-03, Vol.24 (6), p.861-862

2008

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butterfly plant arms-race escalated by gene and genome duplications

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (27), p.8362-8366

2015

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Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011803-e1011803

2024

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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

Nature communications, 2019-06, Vol.10 (1), p.2878-12, Article 2878

2019

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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

PLoS genetics, 2018-03, Vol.14 (3), p.e1007267-e1007267

2018

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Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

The New phytologist, 2012-10, Vol.196 (2), p.596-605

2012

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Convergent evolution of polyploid genomes from across the eukaryotic tree of life

G3 : genes - genomes - genetics, 2022-05, Vol.12 (6)

2022

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Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans

Proceedings of the Royal Society. B, Biological sciences, 2004-01, Vol.271 (1534), p.89

2004

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A Single, Shared Triploidy in Three Species of Parasitic Nematodes

G3 : genes - genomes - genetics, 2020-01, Vol.10 (1), p.225-233

2020

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Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks

PloS one, 2014-01, Vol.9 (1), p.e87115

2014

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Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (20), p.8397-8402

2007

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Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

Proceedings of the National Academy of Sciences - PNAS, 2009-11, Vol.106 (44), p.18644-18649

2009

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Turning a hobby into a job: How duplicated genes find new functions

Nature reviews. Genetics, 2008-12, Vol.9 (12), p.938-950

2008

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Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae

Proceedings of the Royal Society. B, Biological sciences, 2022-10, Vol.289 (1985), p.20221810

2022

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Functional partitioning of yeast co-expression networks after genome duplication

PLoS biology, 2006-04, Vol.4 (4), p.e109-e109

2006

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Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

Current opinion in plant biology, 2014-06, Vol.19, p.91-98

2014

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Long identical multispecies elements in plant and animal genomes

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.E1183-E1191

2012

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Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

Seminars in cell & developmental biology, 2013-04, Vol.24 (4), p.320-331

2013

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Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Scientific reports, 2018-05, Vol.8 (1), p.7120-1, Article 7120

2018

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Probabilistic Cross-Species Inference of Orthologous Genomic Regions Created by Whole-Genome Duplication in Yeast

Genetics (Austin), 2008-07, Vol.179 (3), p.1681-1692

2008

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Distinct C4 sub‐types and C3 bundle sheath isolation in the Paniceae grasses

Plant direct, 2021-12, Vol.5 (12), p.e373-n/a

2021

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Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

Microbiome, 2017-06, Vol.5 (1), p.60-60, Article 60

2017

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The lasting after-effects of an ancient polyploidy on the genomes of teleosts

POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes

Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy

GenomeVx: simple web-based creation of editable circular chromosome maps

butterfly plant arms-race escalated by gene and genome duplications

Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis

Convergent evolution of polyploid genomes from across the eukaryotic tree of life

Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

Turning a hobby into a job: How duplicated genes find new functions

Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae

Functional partitioning of yeast co-expression networks after genome duplication

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

Long identical multispecies elements in plant and animal genomes

Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Probabilistic Cross-Species Inference of Orthologous Genomic Regions Created by Whole-Genome Duplication in Yeast

Distinct C4 sub‐types and C3 bundle sheath isolation in the Paniceae grasses

Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

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