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Breaths, Twists, and Turns of Atomistic Nucleosomes

Journal of molecular biology, 2021-03, Vol.433 (6), p.166744-166744, Article 166744

2021

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Histone tails cooperate to control the breathing of genomic nucleosomes

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009013-e1009013

2021

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An atypical differentiation: Vaslui vs Vasluieț

Diacronia (Iași), 2018-10 (8), p.1-10, Article A122/en

Cojocaru, Vlad

2018

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O diferențiere atipică: Vaslui vs Vasluieț

Diacronia (Iași), 2018-10 (8), p.1-9, Article A122/ro

Cojocaru, Vlad

2018

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Chromatosome Structure and Dynamics from Molecular Simulations

Annual review of physical chemistry, 2020-04, Vol.71 (1), p.101-119

2020

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A weak coupling mechanism for the early steps of the recovery stroke of myosin VI: A free energy simulation and string method analysis

PLoS computational biology, 2024-04, Vol.20 (4), p.e1012005

2024

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Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational Modification

Biophysical journal, 2018-05, Vol.114 (10), p.2363-2375

2018

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Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and NMR data

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011519-e1011519

2024

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OCT4 interprets and enhances nucleosome flexibility

Nucleic acids research, 2022-10, Vol.50 (18), p.10311-10327

2022

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Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery

PLoS computational biology, 2015-06, Vol.11 (6), p.e1004287-e1004287

2015

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The ubiquitination landscape of the influenza A virus polymerase

Nature communications, 2023-02, Vol.14 (1), p.787-787, Article 787

2023

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Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome

Nucleic acids research, 2016-08, Vol.44 (14), p.6599-6613

2016

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Structure and dynamics of the membrane-bound cytochrome P450 2C9

PLoS computational biology, 2011-08, Vol.7 (8), p.e1002152-e1002152

2011

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Structural dynamics in chromatin unraveling by pioneer transcription factors

Biophysical reviews, 2024-06, Vol.16 (3), p.365-382

2024

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Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency

Scientific reports, 2015-08, Vol.5 (1), p.13533-13533, Article 13533

2015

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DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors

Nucleic acids research, 2015-02, Vol.43 (3), p.1513-1528

2015

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Regulation of the Activity of Lactate Dehydrogenases from Four Lactic Acid Bacteria

The Journal of biological chemistry, 2013-07, Vol.288 (29), p.21295-21306

2013

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Reprogramming to pluripotency is an ancient trait of vertebrate Oct4 and Pou2 proteins

Nature communications, 2012, Vol.3 (1), p.1279-1279, Article 1279

2012

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Primordial germ cell migration in the chick and mouse embryo: the role of the chemokine SDF-1/CXCL12

Developmental biology, 2004-08, Vol.272 (2), p.351-361

2004

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Multiple, ligand-dependent routes from the active site of cytochrome P450 2C9

Current drug metabolism, 2012-02, Vol.13 (2), p.143-154

2012

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Extending the ability of cyclic carbonates for extracting BTEX to challenging low aromatic content naphtha: the designer solvent role at process scale

Computers & chemical engineering, 2021-11, Vol.154, p.107468, Article 107468

2021

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Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003159-e1003159

2013

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Breaths, twists, and turns of free and interacting atomistic nucleosomes

Biophysical journal, 2022-02, Vol.121 (3), p.5a-5a

2022

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Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding

Biophysical journal, 2020-05, Vol.118 (9), p.2280-2296

2020

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Oct4 Pioneers Genomic Nucleosomes in Motion

Biophysical journal, 2021-02, Vol.120 (3), p.139a-139a

2021

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Breaths, Twists, and Turns of Atomistic Nucleosomes

Histone tails cooperate to control the breathing of genomic nucleosomes

An atypical differentiation: Vaslui vs Vasluieț

O diferențiere atipică: Vaslui vs Vasluieț

Chromatosome Structure and Dynamics from Molecular Simulations

A weak coupling mechanism for the early steps of the recovery stroke of myosin VI: A free energy simulation and string method analysis

Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational Modification

Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and NMR data

OCT4 interprets and enhances nucleosome flexibility

Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery

The ubiquitination landscape of the influenza A virus polymerase

Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome

Structure and dynamics of the membrane-bound cytochrome P450 2C9

Structural dynamics in chromatin unraveling by pioneer transcription factors

Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency

DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors

Regulation of the Activity of Lactate Dehydrogenases from Four Lactic Acid Bacteria

Reprogramming to pluripotency is an ancient trait of vertebrate Oct4 and Pou2 proteins

Primordial germ cell migration in the chick and mouse embryo: the role of the chemokine SDF-1/CXCL12

Multiple, ligand-dependent routes from the active site of cytochrome P450 2C9

Extending the ability of cyclic carbonates for extracting BTEX to challenging low aromatic content naphtha: the designer solvent role at process scale

Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria

Breaths, twists, and turns of free and interacting atomistic nucleosomes

Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding

Oct4 Pioneers Genomic Nucleosomes in Motion

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