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Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006867

2019

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Multiplex secretome engineering enhances recombinant protein production and purity

Nature communications, 2020-04, Vol.11 (1), p.1908-1908, Article 1908

2020

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Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration

Nature communications, 2022-05, Vol.13 (1), p.2455-15, Article 2455

2022

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Impact of chemotherapy on surgical outcomes in ileostomy reversal: a propensity score matching study from a single centre

Techniques in coloproctology, 2023-12, Vol.27 (12), p.1227-1234

2023

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Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis

Nature communications, 2021-08, Vol.12 (1), p.4988-4988, Article 4988

2021

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Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs

PLoS computational biology, 2017-01, Vol.13 (1), p.e1005368

2017

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Systems glycobiology for discovering drug targets, biomarkers, and rational designs for glyco-immunotherapy

Journal of biomedical science, 2021-06, Vol.28 (1), p.1-50, Article 50

2021

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Copeptin as an Indicator of Hemodynamic Derangement and Prognosis in Liver Cirrhosis

PloS one, 2015-09, Vol.10 (9), p.e0138264-e0138264

2015

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ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis

Proceedings of the National Academy of Sciences - PNAS, 2020-04, Vol.117 (17), p.9311-9317

2020

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Partitioning the human transcriptome using HKera, a novel classifier of housekeeping and tissue-specific genes

PloS one, 2013-12, Vol.8 (12), p.e83040-e83040

2013

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A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years

Molecular psychiatry, 2023-02, Vol.28 (2), p.822-833

2023

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A unique esophageal extracellular matrix proteome alters normal fibroblast function in severe eosinophilic esophagitis

Journal of allergy and clinical immunology, 2021-08, Vol.148 (2), p.486-494

2021

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Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate

Nature chemical biology, 2021-06, Vol.17 (6), p.684-692

2021

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LIGHT controls distinct homeostatic and inflammatory gene expression profiles in esophageal fibroblasts via differential HVEM and LTβR-mediated mechanisms

Mucosal immunology, 2022-02, Vol.15 (2), p.327-337

2022

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A proteome view of structural, functional, and taxonomic characteristics of major protein domain clusters

Scientific reports, 2017-10, Vol.7 (1), p.14210-9, Article 14210

2017

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A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

Beilstein journal of organic chemistry, 2020-10, Vol.16 (1), p.2645-2662

2020

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Author Correction: Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate

Nature chemical biology, 2022-05, Vol.18 (5), p.575-575

2022

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Dysregulation of the secretory pathway connects Alzheimer’s disease genetics to aggregate formation

Cell systems, 2021-09, Vol.12 (9), p.873-884.e4

2021

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Artificial intelligence in the analysis of glycosylation data

Biotechnology advances, 2022-11, Vol.60, p.108008-108008, Article 108008

2022

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A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits

BMC bioinformatics, 2013-10, Vol.14 Suppl 16 (S16), p.S5-S5, Article S5

2013

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Dynamical coupled-channel study of K + Λ photoproduction

Nuclear physics. A, 2005-06, Vol.755, p.463-466

2005

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Increased Production of LIGHT by T Cells in Eosinophilic Esophagitis Promotes Differentiation of Esophageal Fibroblasts Toward an Inflammatory Phenotype

Gastroenterology (New York, N.Y. 1943), 2020-11, Vol.159 (5), p.1778-1792.e13

2020

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Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters

BMC systems biology, 2014-01, Vol.8 (1), p.4-4, Article 4

2014

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Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine

Cell host & microbe, 2022-08, Vol.30 (8), p.1163-1172.e6

2022

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Mechanotransduction-induced interplay between phospholamban and yes-activated protein induces smooth muscle cell hypertrophy

Mucosal immunology, 2024-06, Vol.17 (3), p.315-322

2024

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Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions

Multiplex secretome engineering enhances recombinant protein production and purity

Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration

Impact of chemotherapy on surgical outcomes in ileostomy reversal: a propensity score matching study from a single centre

Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis

Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs

Systems glycobiology for discovering drug targets, biomarkers, and rational designs for glyco-immunotherapy

Copeptin as an Indicator of Hemodynamic Derangement and Prognosis in Liver Cirrhosis

ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis

Partitioning the human transcriptome using HKera, a novel classifier of housekeeping and tissue-specific genes

A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years

A unique esophageal extracellular matrix proteome alters normal fibroblast function in severe eosinophilic esophagitis

Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate

LIGHT controls distinct homeostatic and inflammatory gene expression profiles in esophageal fibroblasts via differential HVEM and LTβR-mediated mechanisms

A proteome view of structural, functional, and taxonomic characteristics of major protein domain clusters

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

Author Correction: Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate

Dysregulation of the secretory pathway connects Alzheimer’s disease genetics to aggregate formation

Artificial intelligence in the analysis of glycosylation data

A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits

Dynamical coupled-channel study of K + Λ photoproduction

Increased Production of LIGHT by T Cells in Eosinophilic Esophagitis Promotes Differentiation of Esophageal Fibroblasts Toward an Inflammatory Phenotype

Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters

Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine

Mechanotransduction-induced interplay between phospholamban and yes-activated protein induces smooth muscle cell hypertrophy

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