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Game on, science - how video game technology may help biologists tackle visualization challenges

PloS one, 2013-03, Vol.8 (3), p.e57990-e57990

2013

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The conical shape of DIM lipids promotes Mycobacterium tuberculosis infection of macrophages

Proceedings of the National Academy of Sciences - PNAS, 2019-12, Vol.116 (51), p.25649-25658

2019

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Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons

Cell, 2020-01, Vol.180 (2), p.323-339.e19

2020

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Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes

Scientific reports, 2017-11, Vol.7 (1), p.16647-15, Article 16647

2017

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Supramolecular organisation and dynamics of mannosylated phosphatidylinositol lipids in the mycobacterial plasma membrane

Biophysical journal, 2023-02, Vol.122 (3), p.136a-136a

2023

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Membrane stiffness is modified by integral membrane proteins

Soft matter, 2016-01, Vol.12 (37), p.7792-7803

2016

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How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins

Nature communications, 2018-07, Vol.9 (1), p.2846-12, Article 2846

2018

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Bendix: intuitive helix geometry analysis and abstraction

Bioinformatics, 2012-08, Vol.28 (16), p.2193-2194

2012

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Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes

Biochemistry (Easton), 2016-11, Vol.55 (45), p.6238-6249

2016

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Design – a new way to look at old molecules

Journal of integrative bioinformatics, 2022-07, Vol.19 (2), p.42-52

2022

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Super-complexes of adhesion GPCRs and neural guidance receptors

Nature communications, 2016-04, Vol.7 (1), p.11184-13, Article 11184

2016

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Proteasome complexes experience profound structural and functional rearrangements throughout mammalian spermatogenesis

Proceedings of the National Academy of Sciences - PNAS, 2022-04, Vol.119 (15), p.e2116826119-e2116826119

2022

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MDverse, shedding light on the dark matter of molecular dynamics simulations

eLife, 2024-08, Vol.12

2024

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Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions

Structure (London), 2016-02, Vol.24 (2), p.337-347

2016

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Molecular Modeling and Simulation of the Mycobacterial Cell Envelope: From Individual Components to Cell Envelope Assemblies

The journal of physical chemistry. B, 2023-12, Vol.127 (51), p.10941-10949

2023

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Molecular dynamics simulation of Mycobacterium tuberculosis cell envelopes: Mycomembranes

Biophysical journal, 2024-02, Vol.123 (3), p.507a-507a

2024

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Coarse-grained simulations: Unraveling the complex structure and dynamics of the mycobacterial outer membrane

Biophysical journal, 2024-02, Vol.123 (3), p.94a-94a

2024

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Visualizing protein structures - tools and trends

Biochemical Society transactions, 2020-04, Vol.48 (2), p.499-506

2020

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Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes

Biophysical journal, 2015-08, Vol.109 (3), p.461-468

2015

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Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale

Current opinion in structural biology, 2016-10, Vol.40, p.8-16

2016

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Cholesterol Interaction Sites on the Transmembrane Domain of the Hedgehog Signal Transducer and Class F G Protein-Coupled Receptor Smoothened

Structure (London), 2019-03, Vol.27 (3), p.549-559.e2

2019

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Combining MD Simulations and 31P NMR Spectroscopy to Decipher Lamellar to Hexagonal Phase Transition Promoted by Diverse Lipid Types

Biophysical journal, 2018-02, Vol.114 (3), p.605a-606a

2018

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Monte Carlo and Molecular Dynamics Simulations to Explain Biomembrane Meso-Patterning by a Composition-Curvature Coupling Mechanism

Biophysical journal, 2020-02, Vol.118 (3), p.186a-186a

2020

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Molecular Graphics: Bridging Structural Biologists and Computer Scientists

Structure (London), 2019-11, Vol.27 (11), p.1617-1623

2019

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Coarse-Graining the Recognition of a Glycolipid by the C‑Type Lectin Mincle Receptor

The journal of physical chemistry. B, 2024-10, Vol.128 (41), p.9935-9946

2024

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Game on, science - how video game technology may help biologists tackle visualization challenges

The conical shape of DIM lipids promotes Mycobacterium tuberculosis infection of macrophages

Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons

Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes

Supramolecular organisation and dynamics of mannosylated phosphatidylinositol lipids in the mycobacterial plasma membrane

Membrane stiffness is modified by integral membrane proteins

How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins

Bendix: intuitive helix geometry analysis and abstraction

Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes

Design – a new way to look at old molecules

Super-complexes of adhesion GPCRs and neural guidance receptors

Proteasome complexes experience profound structural and functional rearrangements throughout mammalian spermatogenesis

MDverse, shedding light on the dark matter of molecular dynamics simulations

Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions

Molecular Modeling and Simulation of the Mycobacterial Cell Envelope: From Individual Components to Cell Envelope Assemblies

Molecular dynamics simulation of Mycobacterium tuberculosis cell envelopes: Mycomembranes

Coarse-grained simulations: Unraveling the complex structure and dynamics of the mycobacterial outer membrane

Visualizing protein structures - tools and trends

Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes

Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale

Cholesterol Interaction Sites on the Transmembrane Domain of the Hedgehog Signal Transducer and Class F G Protein-Coupled Receptor Smoothened

Combining MD Simulations and 31P NMR Spectroscopy to Decipher Lamellar to Hexagonal Phase Transition Promoted by Diverse Lipid Types

Monte Carlo and Molecular Dynamics Simulations to Explain Biomembrane Meso-Patterning by a Composition-Curvature Coupling Mechanism

Molecular Graphics: Bridging Structural Biologists and Computer Scientists

Coarse-Graining the Recognition of a Glycolipid by the C‑Type Lectin Mincle Receptor

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