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Salmonella nomenclature in the genomic era: a time for change

Scientific reports, 2021-04, Vol.11 (1), p.7494-7494, Article 7494

2021

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Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

PLoS neglected tropical diseases, 2019-09, Vol.13 (9), p.e0007620-e0007620

2019

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Two Outbreaks of Foodborne Gastrointestinal Infection Linked to Consumption of Imported Melons, United Kingdom, March to August 2021

Journal of food protection, 2023-01, Vol.86 (1), p.100027-100027, Article 100027

2023

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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

PLoS neglected tropical diseases, 2020-09, Vol.14 (9), p.e0008613-e0008613

2020

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ESBL-Producing and Macrolide-Resistant Shigella sonnei Infections among Men Who Have Sex with Men, England, 2015

Emerging infectious diseases, 2016-11, Vol.22 (11), p.1948-1952

2016

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A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia

Nature communications, 2023-06, Vol.14 (1), p.3517-3517, Article 3517

2023

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Emergence of Multidrug-Resistant Escherichia coli Producing CTX-M, MCR-1, and FosA in Retail Food From Egypt

Frontiers in cellular and infection microbiology, 2021-07, Vol.11, p.681588-681588

2021

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An investigation of the diversity of strains of enteroaggregative Escherichia coli isolated from cases associated with a large multi-pathogen foodborne outbreak in the UK

PloS one, 2014-05, Vol.9 (5), p.e98103

2014

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Characterization of a Verocytotoxin-Producing Enteroaggregative Escherichia coli Serogroup O111:H21 Strain Associated with a Household Outbreak in Northern Ireland

Journal of Clinical Microbiology, 2012-12, Vol.50 (12), p.4116-4119

2012

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Whole-Genome Sequencing for National Surveillance of Shigella flexneri

Frontiers in microbiology, 2017-09, Vol.8, p.1700-1700

2017

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Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences

Journal of clinical microbiology, 2017-02, Vol.55 (2), p.616-623

2017

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Linking epidemiological and genomic data in cases of enteric fever in England to inform clinical management and public health action

Journal of antimicrobial chemotherapy, 2024-08, Vol.79 (8), p.1811-1819

2024

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Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK

Journal of antimicrobial chemotherapy, 2016-05, Vol.71 (5), p.1178-1182

2016

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First Report of CTX-M-15 Salmonella Typhi From England

Clinical infectious diseases, 2018-06, Vol.66 (12), p.1976-1977

2018

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An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI

Genomics (San Diego, Calif.), 2021-09, Vol.113 (5), p.3152-3162

2021

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Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae

Journal of clinical microbiology, 2018-11, Vol.56 (11)

2018

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Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015

Journal of antimicrobial chemotherapy, 2017-09, Vol.72 (9), p.2496-2502

2017

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Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015

Journal of medical microbiology, 2016-08, Vol.65 (8), p.882-884

2016

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A proposed core genome scheme for analyses of the Salmonella genus

Genomics (San Diego, Calif.), 2020-01, Vol.112 (1), p.371-378

2020

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Identification and characterisation of enteroaggregative Escherichia coli subtypes associated with human disease

Scientific reports, 2020-05, Vol.10 (1), p.7475-7475, Article 7475

2020

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Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157

Frontiers in microbiology, 2016-03, Vol.7, p.258-258

2016

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Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels

Journal of clinical microbiology, 2015-01, Vol.53 (1), p.35-42

2015

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Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005-2016

Journal of medical microbiology, 2018-06, Vol.67 (6), p.884-888

2018

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The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Genome research, 2020-01, Vol.30 (1), p.138

2020

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Fluoroquinolone-Resistant Enteric Bacteria in Sub-Saharan Africa: Clones, Implications and Research Needs

Frontiers in microbiology, 2016-04, Vol.7, p.558-558

2016

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Salmonella nomenclature in the genomic era: a time for change

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

Two Outbreaks of Foodborne Gastrointestinal Infection Linked to Consumption of Imported Melons, United Kingdom, March to August 2021

Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

ESBL-Producing and Macrolide-Resistant Shigella sonnei Infections among Men Who Have Sex with Men, England, 2015

A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia

Emergence of Multidrug-Resistant Escherichia coli Producing CTX-M, MCR-1, and FosA in Retail Food From Egypt

An investigation of the diversity of strains of enteroaggregative Escherichia coli isolated from cases associated with a large multi-pathogen foodborne outbreak in the UK

Characterization of a Verocytotoxin-Producing Enteroaggregative Escherichia coli Serogroup O111:H21 Strain Associated with a Household Outbreak in Northern Ireland

Whole-Genome Sequencing for National Surveillance of Shigella flexneri

Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences

Linking epidemiological and genomic data in cases of enteric fever in England to inform clinical management and public health action

Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK

First Report of CTX-M-15 Salmonella Typhi From England

An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI

Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae

Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015

Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015

A proposed core genome scheme for analyses of the Salmonella genus

Identification and characterisation of enteroaggregative Escherichia coli subtypes associated with human disease

Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157

Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels

Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005-2016

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Fluoroquinolone-Resistant Enteric Bacteria in Sub-Saharan Africa: Clones, Implications and Research Needs

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