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PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

Bioinformatics (Oxford, England), 2017-01, Vol.33 (1), p.128-129

2017

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PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

BMC bioinformatics, 2012-05, Vol.13 (1), p.87-87, Article 87

2012

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Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

BMC bioinformatics, 2009-05, Vol.10 (152), p.152-152, Article 152

2009

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Adjusted Wallace Coefficient as a Measure of Congruence between Typing Methods

Journal of Clinical Microbiology, 2011-11, Vol.49 (11), p.3997-4000

2011

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Illustration of a Common Framework for Relating Multiple Typing Methods by Application to Macrolide-Resistant Streptococcus pyogenes

Journal of Clinical Microbiology, 2006-07, Vol.44 (7), p.2524-2532

2006

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Analysis of Invasiveness of Pneumococcal Serotypes and Clones Circulating in Portugal before Widespread Use of Conjugate Vaccines Reveals Heterogeneous Behavior of Clones Expressing the Same Serotype

Journal of Clinical Microbiology, 2011-04, Vol.49 (4), p.1369-1375

2011

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Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

Nucleic acids research, 2019-01, Vol.47 (D1), p.D188

2019

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A primer on microbial bioinformatics for nonbioinformaticians

Clinical microbiology and infection, 2018-04, Vol.24 (4), p.342-349

2018

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Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

Frontiers in microbiology, 2017-05, Vol.8, p.909-909

2017

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Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of Staphylococcus epidermidis Clonal Lineages

Frontiers in microbiology, 2019-08, Vol.10, p.1971

2019

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Comparison of Molecular Typing Methods for Characterization of Staphylococcus epidermidis: Proposal for Clone Definition

Journal of Clinical Microbiology, 2008-01, Vol.46 (1), p.118-129

2008

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Dynamic susceptibility of dipolar coupled magnetic vortices

AIP advances, 2024-01, Vol.14 (1), p.015242-015242-5

2024

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Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

PloS one, 2015-03, Vol.10 (3), p.e0119315-e0119315

2015

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Sample pooling methods for efficient pathogen screening: Practical implications

PloS one, 2020-11, Vol.15 (11), p.e0236849-e0236849

2020

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High Rates of Transmission of and Colonization by Streptococcus pneumoniae and Haemophilus influenzae within a Day Care Center Revealed in a Longitudinal Study

Journal of Clinical Microbiology, 2008-01, Vol.46 (1), p.225-234

2008

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Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones

FEMS microbiology ecology, 2014-12, Vol.90 (3), p.689-698

2014

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Dipolar domain wall tuning in Fe@Py core-shell cylinders

Journal of magnetism and magnetic materials, 2019-04, Vol.476, p.574-579

2019

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Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

Scientific reports, 2016-08, Vol.6 (1), p.31736-31736, Article 31736

2016

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Fast phylogenetic inference from typing data

Algorithms for molecular biology, 2018-02, Vol.13 (1), p.4-4, Article 4

2018

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Characterization of the Genetic Lineages Responsible for Pneumococcal Invasive Disease in Portugal

Journal of Clinical Microbiology, 2005-04, Vol.43 (4), p.1706-1715

2005

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Highly Penicillin-Resistant Multidrug-Resistant Pneumococcus-Like Strains Colonizing Children in Oeiras, Portugal: Genomic Characteristics and Implications for Surveillance

Journal of Clinical Microbiology, 2010-01, Vol.48 (1), p.238-246

2010

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Domain wall depinning from FM/AFM interface defects by spin-polarized current

AIP advances, 2022-03, Vol.12 (3), p.035252-035252-5

2022

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BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

iScience, 2020-01, Vol.23 (1), p.100769-100769, Article 100769

2020

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New magnetic phases in thin terbium films

AIP advances, 2020-01, Vol.10 (1), p.015006-015006-4

2020

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Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016

Euro surveillance : bulletin européen sur les maladies transmissibles, 2020-04, Vol.25 (16), p.1

2020

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PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

Adjusted Wallace Coefficient as a Measure of Congruence between Typing Methods

Illustration of a Common Framework for Relating Multiple Typing Methods by Application to Macrolide-Resistant Streptococcus pyogenes

Analysis of Invasiveness of Pneumococcal Serotypes and Clones Circulating in Portugal before Widespread Use of Conjugate Vaccines Reveals Heterogeneous Behavior of Clones Expressing the Same Serotype

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

A primer on microbial bioinformatics for nonbioinformaticians

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of Staphylococcus epidermidis Clonal Lineages

Comparison of Molecular Typing Methods for Characterization of Staphylococcus epidermidis: Proposal for Clone Definition

Dynamic susceptibility of dipolar coupled magnetic vortices

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

Sample pooling methods for efficient pathogen screening: Practical implications

High Rates of Transmission of and Colonization by Streptococcus pneumoniae and Haemophilus influenzae within a Day Care Center Revealed in a Longitudinal Study

Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones

Dipolar domain wall tuning in Fe@Py core-shell cylinders

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

Fast phylogenetic inference from typing data

Characterization of the Genetic Lineages Responsible for Pneumococcal Invasive Disease in Portugal

Highly Penicillin-Resistant Multidrug-Resistant Pneumococcus-Like Strains Colonizing Children in Oeiras, Portugal: Genomic Characteristics and Implications for Surveillance

Domain wall depinning from FM/AFM interface defects by spin-polarized current

BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

New magnetic phases in thin terbium films

Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016

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