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PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

Bioinformatics (Oxford, England), 2017-01, Vol.33 (1), p.128-129

2017

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GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Genome research, 2018-09, Vol.28 (9), p.1395-1404

2018

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PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

BMC bioinformatics, 2012-05, Vol.13 (1), p.87-87, Article 87

2012

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PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

Nucleic acids research, 2016-07, Vol.44 (W1), p.W246-W251

2016

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Distance-based phylogenetic inference from typing data: a unifying view

Briefings in bioinformatics, 2021-05, Vol.22 (3), p.1-16

2021

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Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas

Nucleic acids research, 2021-01, Vol.49 (D1), p.D660-D666

2021

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Polymerase Chain Reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain

Letters in applied microbiology, 2023-08, Vol.76 (8)

2023

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Analysis of Typing Methods for Epidemiological Surveillance of both Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Strains

Journal of Clinical Microbiology, 2008-01, Vol.46 (1), p.136-144

2008

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Lactobacillus mulieris sp. nov., a new species of Lactobacillus delbrueckii group

International journal of systematic and evolutionary microbiology, 2020-03, Vol.70 (3), p.1527-1522

2020

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Citrobacter portucalensis sp. nov., isolated from an aquatic sample

International journal of systematic and evolutionary microbiology, 2017-09, Vol.67 (9), p.3513-3517

2017

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Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC

The Pediatric infectious disease journal, 2014-03, Vol.33 (3), p.306-310

2014

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Distinct phenotypic and genomic signatures underlie contrasting pathogenic potential of Staphylococcus epidermidis clonal lineages

Frontiers in microbiology, 2019, Vol.10, p.1971

2019

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Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

PloS one, 2015-03, Vol.10 (3), p.e0119315-e0119315

2015

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Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

Scientific reports, 2018-02, Vol.8 (1), p.3028-9, Article 3028

2018

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chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Microbial genomics, 2018-03, Vol.4 (3)

2018

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Natural occurrence of Escherichia coli-infecting bacteriophages in clinical samples

Frontiers in microbiology, 2019-10, Vol.10, p.2484-2484

2019

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Fast phylogenetic inference from typing data

Algorithms for molecular biology, 2018-02, Vol.13 (1), p.4-4, Article 4

2018

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Comparing matrix-assisted laser desorption ionization–time of flight mass spectrometry and phenotypic and molecular methods for identification of species within the Streptococcus anginosus group

Journal of clinical microbiology, 2015-11, Vol.53 (11), p.3580-3588

2015

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Serum lipid alterations in GBA-associated Parkinson's disease

Parkinsonism & related disorders, 2017-11, Vol.44, p.58-65

2017

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Genome analysis of Legionella pneumophila ST23 from various countries reveals highly similar strains

Life science alliance, 2022-06, Vol.5 (6), p.e202101117

2022

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Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting

Future microbiology, 2017-03, Vol.12 (4), p.271-283

2017

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Highly specific blood-brain barrier transmigrating single-domain antibodies selected by an In Vivo phage display screening

Pharmaceutics, 2021-10, Vol.13(10):1598 (10), p.1598

2021

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LMAS: evaluating metagenomic short de novo assembly methods through defined communities

Gigascience, 2022-12, Vol.12

2022

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Spontaneous Genomic Variation as a Survival Strategy of Nosocomial Staphylococcus haemolyticus

Microbiology spectrum, 2023-03, Vol.11 (2), p.e0255222-e0255222

2023

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Large-Scale Simulations of Bacterial Populations Over Complex Networks

Journal of computational biology, 2018-08, Vol.25 (8), p.850-861

2018

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PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

Distance-based phylogenetic inference from typing data: a unifying view

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas

Polymerase Chain Reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain

Analysis of Typing Methods for Epidemiological Surveillance of both Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Strains

Lactobacillus mulieris sp. nov., a new species of Lactobacillus delbrueckii group

Citrobacter portucalensis sp. nov., isolated from an aquatic sample

Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC

Distinct phenotypic and genomic signatures underlie contrasting pathogenic potential of Staphylococcus epidermidis clonal lineages

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Natural occurrence of Escherichia coli-infecting bacteriophages in clinical samples

Fast phylogenetic inference from typing data

Comparing matrix-assisted laser desorption ionization–time of flight mass spectrometry and phenotypic and molecular methods for identification of species within the Streptococcus anginosus group

Serum lipid alterations in GBA-associated Parkinson's disease

Genome analysis of Legionella pneumophila ST23 from various countries reveals highly similar strains

Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting

Highly specific blood-brain barrier transmigrating single-domain antibodies selected by an In Vivo phage display screening

LMAS: evaluating metagenomic short de novo assembly methods through defined communities

Spontaneous Genomic Variation as a Survival Strategy of Nosocomial Staphylococcus haemolyticus

Large-Scale Simulations of Bacterial Populations Over Complex Networks

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