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Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome

Biochimica et biophysica acta, 2016-01, Vol.1859 (1), p.3-15

2016

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Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

Nucleic acids research, 2019-01, Vol.47 (D1), p.D752-D758

2019

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The Human Cell Atlas

eLife, 2017-12, Vol.6

2017

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refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites

Journal of molecular biology, 2019-06, Vol.431 (13), p.2407-2422

2019

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C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Nature communications, 2019-01, Vol.10 (1), p.360-360, Article 360

2019

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Site-specific DICER and DROSHA RNA products control the DNA―damage response

Nature (London), 2012-08, Vol.488 (7410), p.231-235

2012

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Direct generation of functional dopaminergic neurons from mouse and human fibroblasts

Nature (London), 2011-08, Vol.476 (7359), p.224-227

2011

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Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue

Mammalian genome, 2022-06, Vol.33 (2), p.245-247

2022

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High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Genome research, 2013-01, Vol.23 (1), p.169-180

2013

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Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Nature communications, 2020-01, Vol.11 (1), p.168-168, Article 168

2020

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Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA

Nature structural & molecular biology, 2013-03, Vol.20 (3), p.332-338

2013

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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Nature communications, 2020-02, Vol.11 (1), p.1018-1018, Article 1018

2020

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Recombination of repeat elements generates somatic complexity in human genomes

Cell, 2022-08, Vol.185 (16), p.3025-3040.e6

2022

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Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

Blood, 2014-04, Vol.123 (17), p.e58-e67

2014

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Small RNAs derived from snoRNAs

RNA (Cambridge), 2009-07, Vol.15 (7), p.1233-1240

2009

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NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements

Nature genetics, 2019-09, Vol.51 (9), p.1369-1379

2019

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Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Molecular systems biology, 2015-12, Vol.11 (12), p.852-n/a

2015

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LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

Nature communications, 2021-02, Vol.12 (1), p.925-925, Article 925

2021

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Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages

Scientific reports, 2020-10, Vol.10 (1), p.17991-17991, Article 17991

2020

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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

Nucleic acids research, 2021-01, Vol.49 (D1), p.D892-D898

2021

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Somatic retrotransposition alters the genetic landscape of the human brain

Nature (London), 2011-10, Vol.479 (7374), p.534-537

2011

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Genome-Wide Technologies to Study RNA-Chromatin Interactions

Non-coding RNA, 2020-05, Vol.6 (2), p.20

2020

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Hidden layers of human small RNAs

BMC genomics, 2008-04, Vol.9 (1), p.157-157, Article 157

2008

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Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

The Human Cell Atlas

refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Site-specific DICER and DROSHA RNA products control the DNA―damage response

Direct generation of functional dopaminergic neurons from mouse and human fibroblasts

Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Gateways to the FANTOM5 promoter level mammalian expression atlas

Recombination of repeat elements generates somatic complexity in human genomes

Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

Small RNAs derived from snoRNAs

Diversity and dynamics of the Drosophila transcriptome

NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

Somatic retrotransposition alters the genetic landscape of the human brain

Genome-Wide Technologies to Study RNA-Chromatin Interactions

Hidden layers of human small RNAs

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