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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

Infection, genetics and evolution, 2013-10, Vol.19, p.337-348

2013

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Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

PloS one, 2009-03, Vol.4 (3), p.e4724-e4724

2009

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Transmission of Drug-Resistant HIV-1 Is Stabilizing in Europe

The Journal of infectious diseases, 2009-11, Vol.200 (10), p.1503-1508

2009

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Development of HIV Drug Resistance in a Cohort of Adults on First-Line Antiretroviral Therapy in Tanzania during the Stavudine Era

Microbiology research, 2021-12, Vol.12 (4), p.847-861

2021

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Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A

Journal of general virology, 2012-04, Vol.93 (Pt 4), p.889-899

2012

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Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon

Infection, genetics and evolution, 2012-03, Vol.12 (2), p.453-460

2012

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Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings

BMC public health, 2014-10, Vol.14 (1), p.1035-1035, Article 1035

2014

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Effect of Natural Polymorphisms in the HIV-1 CRF02_AG Protease on Protease Inhibitor Hypersusceptibility

Antimicrobial Agents and Chemotherapy, 2012-05, Vol.56 (5), p.2719-2725

2012

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Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

BMC bioinformatics, 2010-08, Vol.11 (1), p.409-409, Article 409

2010

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Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

The Journal of infectious diseases, 2019-06, Vol.220 (2), p.233-243

2019

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Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

The Journal of infectious diseases, 2015-06, Vol.211 (11), p.1735-1744

2015

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Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

AIDS (London), 2015-09, Vol.29 (15), p.2045-2052

2015

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HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

Retrovirology, 2013-01, Vol.10 (1), p.7-7, Article 7

2013

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The global spread of HIV-1 subtype B epidemic

Infection, genetics and evolution, 2016-12, Vol.46, p.169-179

2016

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Full genome sequence of three isolates of hepatitis C virus subtype 4b from Portugal

Archives of virology, 2009-01, Vol.154 (1), p.127-132

2009

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Antiretroviral Drug Resistance in Human Immunodeficiency Virus Type 2

Antimicrobial agents and chemotherapy, 2009-09, Vol.53 (9), p.3611-3619

2009

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Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations

AIDS research and human retroviruses, 2016-05, Vol.32 (5), p.427

2016

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European recommendations for the clinical use of HIV drug resistance testing: 2011 update

AIDS reviews, 2011-04, Vol.13 (2), p.77-108

2011

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Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

BMC infectious diseases, 2014-07, Vol.14 (1), p.407-407, Article 407

2014

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Discordant predictions of residual activity could impact dolutegravir prescription upon raltegravir failure

Journal of clinical virology, 2015-09, Vol.70, p.120-127

2015

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Molecular epidemiological analysis of paired pol/env sequences from Portuguese HIV type 1 patients

AIDS research and human retroviruses, 2011-07, Vol.27 (7), p.803

2011

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A near-full length genotypic assay for HCV1b

Journal of virological methods, 2014-12, Vol.209, p.126-135

2014

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Bayesian network analyses of resistance pathways against efavirenz and nevirapine

AIDS (London), 2008-10, Vol.22 (16), p.2107-2115

2008

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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

Transmission of Drug-Resistant HIV-1 Is Stabilizing in Europe

Development of HIV Drug Resistance in a Cohort of Adults on First-Line Antiretroviral Therapy in Tanzania during the Stavudine Era

Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A

Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon

Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings

Effect of Natural Polymorphisms in the HIV-1 CRF02_AG Protease on Protease Inhibitor Hypersusceptibility

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

The global spread of HIV-1 subtype B epidemic

Full genome sequence of three isolates of hepatitis C virus subtype 4b from Portugal

Antiretroviral Drug Resistance in Human Immunodeficiency Virus Type 2

Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations

European recommendations for the clinical use of HIV drug resistance testing: 2011 update

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

Discordant predictions of residual activity could impact dolutegravir prescription upon raltegravir failure

Molecular epidemiological analysis of paired pol/env sequences from Portuguese HIV type 1 patients

RegaDB: community-driven data management and analysis for infectious diseases

A near-full length genotypic assay for HCV1b

Limited cross-border infections in patients newly diagnosed with HIV in Europe

Bayesian network analyses of resistance pathways against efavirenz and nevirapine

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