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DNA methylation arrays as surrogate measures of cell mixture distribution

BMC bioinformatics, 2012-05, Vol.13 (1), p.86-86, Article 86

2012

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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

Genome Biology, 2018-05, Vol.19 (1), p.64-64, Article 64

2018

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DNA methylation aging clocks: challenges and recommendations

Genome Biology, 2019-11, Vol.20 (1), p.249-24, Article 249

2019

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Cell-type deconvolution from DNA methylation: a review of recent applications

Human molecular genetics, 2017-10, Vol.26 (R2), p.R216-R224

2017

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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

Nature communications, 2022-02, Vol.13 (1), p.761-761, Article 761

2022

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MethylNet: an automated and modular deep learning approach for DNA methylation analysis

BMC bioinformatics, 2020-03, Vol.21 (1), p.108-15, Article 108

2020

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Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner

Microbiome, 2018-07, Vol.6 (1), p.109-109, Article 109

2018

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Widespread redundancy in -omics profiles of cancer mutation states

Genome Biology, 2022-06, Vol.23 (1), p.137-137, Article 137

2022

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5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients

Nature communications, 2016-11, Vol.7 (1), p.13177-11, Article 13177

2016

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Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

PLoS genetics, 2009-08, Vol.5 (8), p.e1000602-e1000602

2009

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Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

Breast cancer research : BCR, 2017-07, Vol.19 (1), p.81-81, Article 81

2017

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MicroRNA Expression Ratio Is Predictive of Head and Neck Squamous Cell Carcinoma

Clinical cancer research, 2009-04, Vol.15 (8), p.2850-2855

2009

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Detailed immune profiling in pediatric Crohn's disease using methylation cytometry

Epigenetics, 2024-12, Vol.19 (1), p.2289786-2289786

2024

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Seroepidemiology of Human Polyomaviruses in a US Population

American journal of epidemiology, 2016-01, Vol.183 (1), p.61-69

2016

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Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors

Nature communications, 2024-04, Vol.15 (1), p.3634-14, Article 3634

2024

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Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors

Nature communications, 2024-04, Vol.15 (1), p.3635-3635, Article 3635

2024

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data

Journal of translational medicine, 2022-11, Vol.20 (1), p.516-516, Article 516

2022

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Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits

Breast cancer research : BCR, 2023-03, Vol.25 (1), p.23-23, Article 23

2023

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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

Clinical epigenetics, 2019-08, Vol.11 (1), p.125, Article 125

2019

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DNA Methylation, Isocitrate Dehydrogenase Mutation, and Survival in Glioma

JNCI : Journal of the National Cancer Institute, 2011-01, Vol.103 (2), p.143-153

2011

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Integrative DNA methylation and gene expression analyses identify DNA packaging and epigenetic regulatory genes associated with low motility sperm

PloS one, 2011-06, Vol.6 (6), p.e20280-e20280

2011

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Hypermethylation and global remodelling of DNA methylation is associated with acquired cisplatin resistance in testicular germ cell tumours

Epigenetics, 2021-10, Vol.16 (10), p.1071-1084

2021

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A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies

Modern pathology, 2021-04, Vol.34 (4), p.808-822

2021

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Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer

Science advances, 2022-08, Vol.8 (31), p.eabj8002-eabj8002

2022

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Microbial Communities in Human Milk Relate to Measures of Maternal Weight

Frontiers in microbiology, 2019-12, Vol.10, p.2886-2886

2019

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DNA methylation arrays as surrogate measures of cell mixture distribution

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

DNA methylation aging clocks: challenges and recommendations

Cell-type deconvolution from DNA methylation: a review of recent applications

Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

MethylNet: an automated and modular deep learning approach for DNA methylation analysis

Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner

Widespread redundancy in -omics profiles of cancer mutation states

5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

MicroRNA Expression Ratio Is Predictive of Head and Neck Squamous Cell Carcinoma

Detailed immune profiling in pediatric Crohn's disease using methylation cytometry

Seroepidemiology of Human Polyomaviruses in a US Population

Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors

Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors

HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data

Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits

Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

DNA Methylation, Isocitrate Dehydrogenase Mutation, and Survival in Glioma

Integrative DNA methylation and gene expression analyses identify DNA packaging and epigenetic regulatory genes associated with low motility sperm

Hypermethylation and global remodelling of DNA methylation is associated with acquired cisplatin resistance in testicular germ cell tumours

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies

Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer

Microbial Communities in Human Milk Relate to Measures of Maternal Weight

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