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Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

The Plant journal : for cell and molecular biology, 2011-04, Vol.66 (1), p.94-116

2011

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Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods

Systematic biology, 2016-07, Vol.65 (4), p.612-627

2016

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Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes

Genome biology and evolution, 2015-01, Vol.7 (1), p.205-217

2015

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Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae

PloS one, 2013-05, Vol.8 (5), p.e64312-e64312

2013

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Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root

Biology (Basel, Switzerland), 2020-03, Vol.9 (4), p.64

2020

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A Phylogenomic Supertree of Birds

Diversity (Basel), 2019-07, Vol.11 (7), p.109

2019

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Identifying localized biases in large datasets: A case study using the avian tree of life

Molecular phylogenetics and evolution, 2013-12, Vol.69 (3), p.1021-1032

2013

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How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes)

Proceedings of the Royal Society. B, Biological sciences, 2017-05, Vol.284 (1854)

2017

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The Structure of Evolutionary Model Space for Proteins across the Tree of Life

Biology (Basel, Switzerland), 2023-02, Vol.12 (2), p.282

2023

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Early mesozoic coexistence of amniotes and hepadnaviridae

PLoS genetics, 2014-12, Vol.10 (12), p.e1004559-e1004559

2014

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Phylogenetic Signal of Indels and the Neoavian Radiation

Diversity (Basel), 2019-07, Vol.11 (7), p.108

2019

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Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa

Scientific reports, 2018-01, Vol.8 (1), p.1333-11, Article 1333

2018

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Deep-Time Demographic Inference Suggests Ecological Release as Driver of Neoavian Adaptive Radiation

Diversity (Basel), 2020-04, Vol.12 (4), p.164

2020

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Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements

BMC ecology and evolution, 2021-11, Vol.21 (1), p.209-209, Article 209

2021

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Protein Structure, Models of Sequence Evolution, and Data Type Effects in Phylogenetic Analyses of Mitochondrial Data: A Case Study in Birds

Diversity (Basel), 2021-11, Vol.13 (11), p.555

2021

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Phylogenomic evidence for multiple losses of flight in ratite birds

Proceedings of the National Academy of Sciences - PNAS, 2008-09, Vol.105 (36), p.13462-13467

2008

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Evolution of the 3R-MYB Gene Family in Plants

Genome biology and evolution, 2017-04, Vol.9 (4), p.1013-1029

2017

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The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences

Biophysica, 2021-06, Vol.1 (2), p.87-105

2021

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Dynamic Patterns of Sex Chromosome Evolution in Neognath Birds: Many Independent Barriers to Recombination at the ATP5F1A Locus

Birds (Basel, Switzerland), 2022-03, Vol.3 (1), p.51-70

2022

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Investigating flock-associated mimicry: examining the evidence for, and drivers of, plumage mimicry in the greater and lesser necklaced laughingthrush

Royal Society open science, 2024-04, Vol.11 (4), p.230976-18

2024

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An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins

Bioinformatics, 2018-07, Vol.34 (13), p.i350-i356

Braun, Edward L

2018

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Bare parts in the Galliformes: the evolution of a multifunctional structure

Royal Society open science, 2024-01, Vol.11 (1), p.231695-16

2024

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Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix

PeerJ (San Francisco, CA), 2014-04, Vol.2, p.e361-e361

2014

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Whole genome phylogeny of Gallus: introgression and data-type effects

Avian research, 2020-03, Vol.11 (1), p.1-15, Article 7

2020

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Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals

Biology (Basel, Switzerland), 2013-03, Vol.2 (1), p.419-444

2013

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Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods

Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae

Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root

A Phylogenomic Supertree of Birds

Identifying localized biases in large datasets: A case study using the avian tree of life

How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes)

The Structure of Evolutionary Model Space for Proteins across the Tree of Life

Early mesozoic coexistence of amniotes and hepadnaviridae

Phylogenetic Signal of Indels and the Neoavian Radiation

Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa

Deep-Time Demographic Inference Suggests Ecological Release as Driver of Neoavian Adaptive Radiation

Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements

Protein Structure, Models of Sequence Evolution, and Data Type Effects in Phylogenetic Analyses of Mitochondrial Data: A Case Study in Birds

Phylogenomic evidence for multiple losses of flight in ratite birds

Evolution of the 3R-MYB Gene Family in Plants

The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences

Dynamic Patterns of Sex Chromosome Evolution in Neognath Birds: Many Independent Barriers to Recombination at the ATP5F1A Locus

Investigating flock-associated mimicry: examining the evidence for, and drivers of, plumage mimicry in the greater and lesser necklaced laughingthrush

An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins

Bare parts in the Galliformes: the evolution of a multifunctional structure

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix

Whole genome phylogeny of Gallus: introgression and data-type effects

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals

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