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Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

The Lancet. Microbe, 2020-12, Vol.1 (8), p.e328-e335

2020

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Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

Science translational medicine, 2017-10, Vol.9 (413)

2017

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Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Genome medicine, 2017-09, Vol.9 (1), p.81-81, Article 81

2017

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The Emergence of Successful Streptococcus pyogenes Lineages through Convergent Pathways of Capsule Loss and Recombination Directing High Toxin Expression

mBio, 2019-12, Vol.10 (6)

2019

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Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

Scientific reports, 2017-08, Vol.7 (1), p.7406-7, Article 7406

2017

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A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing

Scientific reports, 2021-01, Vol.11 (1), p.193-193, Article 193

2021

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Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study

The Lancet. Microbe, 2021-09, Vol.2 (9), p.e472-e480

2021

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Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

Genome medicine, 2017-07, Vol.9 (1), p.70-70, Article 70

2017

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Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

Genome medicine, 2017-12, Vol.9 (1), p.119-119, Article 119

2017

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The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study

Microbiome, 2019-10, Vol.7 (1), p.137-137, Article 137

2019

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Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons

mSphere, 2022-12, Vol.7 (6), p.e0028322-e0028322

2022

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Characteristics of Staphylococcus aureus Isolated from Patients in Busia County Referral Hospital, Kenya

Pathogens (Basel), 2022-12, Vol.11 (12), p.1504

2022

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Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing

Microbial genomics, 2017-07, Vol.3 (7), p.e000114-e000114

2017

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Multi-Drug Resistant Staphylococcus aureus Carriage in Abattoir Workers in Busia, Kenya

Antibiotics (Basel), 2022-12, Vol.11 (12), p.1726

2022

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Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial

The Lancet (British edition), 2021-04, Vol.397 (10282), p.1351-1362

2021

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P23 Rates, treatment and outcomes of vancomycin-resistant Enterococcus faecium bacteraemia at Addenbrooke’s Hospital

JAC-antimicrobial resistance, 2023-06, Vol.5 (Supplement_2)

2023

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A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England

Clinical infectious diseases, 2020-01, Vol.70 (2), p.219-226

2020

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Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory

Journal of antimicrobial chemotherapy, 2019-08, Vol.74 (8), p.2153-2156

2019

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Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae

Genome medicine, 2017-01, Vol.9 (1), p.6, Article 6

2017

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Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes

Journal of antimicrobial chemotherapy, 2020-05, Vol.75 (5), p.1117-1122

2020

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Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory

Journal of clinical microbiology, 2019-06, Vol.57 (6)

2019

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Evolution and host-specific adaptation of Pseudomonas aeruginosa

Science (American Association for the Advancement of Science), 2024-07, Vol.385 (6704), p.eadi0908

2024

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SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

Journal of clinical microbiology, 2022-04, Vol.60 (4), p.e0240821-e0240821

2022

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Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock

Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom

The Emergence of Successful Streptococcus pyogenes Lineages through Convergent Pathways of Capsule Loss and Recombination Directing High Toxin Expression

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing

Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study

Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study

Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons

Characteristics of Staphylococcus aureus Isolated from Patients in Busia County Referral Hospital, Kenya

Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing

Multi-Drug Resistant Staphylococcus aureus Carriage in Abattoir Workers in Busia, Kenya

Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial

P23 Rates, treatment and outcomes of vancomycin-resistant Enterococcus faecium bacteraemia at Addenbrooke’s Hospital

A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England

Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae

Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes

Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory

Evolution and host-specific adaptation of Pseudomonas aeruginosa

SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

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