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SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

BMC bioinformatics, 2010-09, Vol.11 (1), p.485-485, Article 485

2010

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The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera)

PloS one, 2019-12, Vol.14 (12), p.e0225845-e0225845

2019

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Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer

Scientific reports, 2017-09, Vol.7 (1), p.11590-12, Article 11590

2017

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Impact of systemic antimicrobial therapy on the faecal microbiome in symptomatic dairy cows

PloS one, 2024-01, Vol.19 (1), p.e0296290-e0296290

2024

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Carriage of Extended-Spectrum-Beta-Lactamase- and AmpC Beta-Lactamase-Producing Escherichia coli Strains from Humans and Pets in the Same Households

Applied and environmental microbiology, 2020-11, Vol.86 (24), p.1

2020

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BBMerge - Accurate paired shotgun read merging via overlap

PloS one, 2017-10, Vol.12 (10), p.e0185056-e0185056

2017

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One dog's waste is another dog's wealth: A pilot study of fecal microbiota transplantation in dogs with acute hemorrhagic diarrhea syndrome

PloS one, 2021-04, Vol.16 (4), p.e0250344-e0250344

2021

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Quantifying Replication Slippage Error in Cryptosporidium Metabarcoding Studies

The Journal of infectious diseases, 2024-07, Vol.230 (1), p.e144

2024

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A novel, stain-free, natural auto-fluorescent signal, Sig M, identified from cytometric and transcriptomic analysis of infectivity of Cryptosporidium hominis and Cryptosporidium parvum

Frontiers in cellular and infection microbiology, 2023-05, Vol.13, p.1178576-1178576

2023

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Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes

BMC plant biology, 2023-05, Vol.23 (1), p.238-238, Article 238

2023

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A conditional knockout resource for the genome-wide study of mouse gene function

Nature (London), 2011-06, Vol.474 (7351), p.337-342

2011

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sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R

Bioinformatics, 2020-05, Vol.36 (9), p.2938-2940

2020

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Biochar in co-contaminated soil manipulates arsenic solubility and microbiological community structure, and promotes organochlorine degradation

PloS one, 2015-04, Vol.10 (4), p.e0125393-e0125393

2015

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Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies

PloS one, 2020-06, Vol.15 (6), p.e0235066-e0235066

2020

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Extensive epigenetic modification with large-scale chromosomal and plasmid recombination characterise the Legionella longbeachae serogroup 1 genome

Scientific reports, 2022-04, Vol.12 (1), p.5810-5810, Article 5810

2022

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Assessing antimicrobial resistance in pasture-based dairy farms: a 15-month surveillance study in New Zealand

Applied and environmental microbiology, 2024-10

2024

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Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package

Genes, 2024-09, Vol.15 (10), p.1244

2024

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Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Genetics (Austin), 2017-02, Vol.205 (2), p.857-870

2017

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A large chromosomal inversion affects antimicrobial sensitivity of Escherichia coli to sodium deoxycholate

Microbiology (Society for General Microbiology), 2022-08, Vol.168 (8)

2022

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16S rDNA high-throughput sequencing and MALDI-TOF MS are complementary when studying psychrotrophic bacterial diversity of raw cows' milk

International dairy journal, 2019-10, Vol.97, p.86-91

2019

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High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments

PloS one, 2024-01, Vol.19 (1), p.e0295529-e0295529

2024

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A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria

Systematic and applied microbiology, 2020-09, Vol.43 (5), p.126108-126108, Article 126108

2020

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Genomic Profiling of Mycobacterium tuberculosis Strains, Myanmar

Emerging infectious diseases, 2021-11, Vol.27 (11), p.2847-2855

2021

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High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments

PloS one, 2024-01, Vol.19 (1)

2024

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Does land use affect pathogen presence in New Zealand drinking water supplies?

Water research (Oxford), 2020-10, Vol.185, p.116229-116229, Article 116229

2020

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SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera)

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer

Impact of systemic antimicrobial therapy on the faecal microbiome in symptomatic dairy cows

Carriage of Extended-Spectrum-Beta-Lactamase- and AmpC Beta-Lactamase-Producing Escherichia coli Strains from Humans and Pets in the Same Households

BBMerge - Accurate paired shotgun read merging via overlap

One dog's waste is another dog's wealth: A pilot study of fecal microbiota transplantation in dogs with acute hemorrhagic diarrhea syndrome

Quantifying Replication Slippage Error in Cryptosporidium Metabarcoding Studies

A novel, stain-free, natural auto-fluorescent signal, Sig M, identified from cytometric and transcriptomic analysis of infectivity of Cryptosporidium hominis and Cryptosporidium parvum

Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes

A conditional knockout resource for the genome-wide study of mouse gene function

sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R

Biochar in co-contaminated soil manipulates arsenic solubility and microbiological community structure, and promotes organochlorine degradation

Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies

Extensive epigenetic modification with large-scale chromosomal and plasmid recombination characterise the Legionella longbeachae serogroup 1 genome

Assessing antimicrobial resistance in pasture-based dairy farms: a 15-month surveillance study in New Zealand

Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

A large chromosomal inversion affects antimicrobial sensitivity of Escherichia coli to sodium deoxycholate

16S rDNA high-throughput sequencing and MALDI-TOF MS are complementary when studying psychrotrophic bacterial diversity of raw cows' milk

High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments

A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria

Genomic Profiling of Mycobacterium tuberculosis Strains, Myanmar

High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments

Does land use affect pathogen presence in New Zealand drinking water supplies?

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