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Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf

Protein science, 2023-03, Vol.32 (3), p.e4582-n/a

2023

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ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins

Protein science, 2020-01, Vol.29 (1), p.258-267

2020

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Similar protein segments shared between domains of different evolutionary lineages

Protein science, 2022-09, Vol.31 (9), p.e4407-n/a

2022

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ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

Israel journal of chemistry, 2013-04, Vol.53 (3-4), p.199-206

2013

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Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na+/H+ antiporter NHA2

Protein science, 2022-12, Vol.31 (12), p.e4460-n/a

2022

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C5 conserved region of hydrophilic C‐terminal part of Saccharomyces cerevisiae Nha1 antiporter determines its requirement of Erv14 COPII cargo receptor for plasma‐membrane targeting

Molecular microbiology, 2021-01, Vol.115 (1), p.41-57

2021

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Structural motifs in protein cores and at protein–protein interfaces are different

Protein science, 2021-02, Vol.30 (2), p.381-390

2021

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ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

Nucleic acids research, 2016-07, Vol.44 (W1), p.W344-W350

2016

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DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations

BMC bioinformatics, 2019-07, Vol.20 (Suppl 14), p.335-335, Article 335

2019

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A natural upper bound to the accuracy of predicting protein stability changes upon mutations

Bioinformatics (Oxford, England), 2019-05, Vol.35 (9), p.1513-1517

2019

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The ConSurf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures

Proteins, structure, function, and bioinformatics, 2005-02, Vol.58 (3), p.610-617

2005

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Bridging Themes: Short Protein Segments Found in Different Architectures

Molecular biology and evolution, 2021-05, Vol.38 (6), p.2191-2208

2021

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Global view of the protein universe

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (32), p.11691-11696

2014

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PredictProtein--an open resource for online prediction of protein structural and functional features

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W337-W343

2014

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RosettaAntibodyDesign (RAbD): A general framework for computational antibody design

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006112-e1006112

2018

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Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants

Nature communications, 2018-10, Vol.9 (1), p.4205-14, Article 4205

2018

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The Sigma-1 receptor is an ER-localized type II membrane protein

The Journal of biological chemistry, 2021-11, Vol.297 (5), p.101299-101299, Article 101299

2021

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The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

Nucleic acids research, 2009-01, Vol.37 (Database issue), p.D323-D327

2009

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Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling

PLoS computational biology, 2015-10, Vol.11 (10), p.e1004343-e1004343

2015

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A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions

PLoS computational biology, 2023-01, Vol.19 (1), p.e1010812

2023

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On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment

eLife, 2020-12, Vol.9

2020

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Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004405-e1004405

2015

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MGAE-DC: Predicting the synergistic effects of drug combinations through multi-channel graph autoencoders

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010951-e1010951

2023

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Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock

PLoS computational biology, 2023-05, Vol.19 (5), p.e1010680

2023

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Identification and Analysis of Fungal-Specific Regions in the Aspergillus fumigatus Cu Exporter CrpA That Are Essential for Cu Resistance but Not for Virulence

International journal of molecular sciences, 2023-02, Vol.24 (4), p.3705

2023

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Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins

Similar protein segments shared between domains of different evolutionary lineages

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na+/H+ antiporter NHA2

C5 conserved region of hydrophilic C‐terminal part of Saccharomyces cerevisiae Nha1 antiporter determines its requirement of Erv14 COPII cargo receptor for plasma‐membrane targeting

Structural motifs in protein cores and at protein–protein interfaces are different

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations

A natural upper bound to the accuracy of predicting protein stability changes upon mutations

The ConSurf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures

Bridging Themes: Short Protein Segments Found in Different Architectures

Global view of the protein universe

PredictProtein--an open resource for online prediction of protein structural and functional features

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design

Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants

The Sigma-1 receptor is an ER-localized type II membrane protein

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling

A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions

On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

MGAE-DC: Predicting the synergistic effects of drug combinations through multi-channel graph autoencoders

Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock

Identification and Analysis of Fungal-Specific Regions in the Aspergillus fumigatus Cu Exporter CrpA That Are Essential for Cu Resistance but Not for Virulence

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