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STAMP: statistical analysis of taxonomic and functional profiles

Bioinformatics (Oxford, England), 2014-11, Vol.30 (21), p.3123-3124

2014

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A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria

Genome biology and evolution, 2014-03, Vol.6 (3), p.703-713

2014

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Identifying biologically relevant differences between metagenomic communities

Bioinformatics, 2010-03, Vol.26 (6), p.715-721

2010

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature biotechnology, 2013-09, Vol.31 (9), p.814-821

2013

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Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity

NPJ biofilms and microbiomes, 2017-01, Vol.3 (1), p.2-7, Article 2

2017

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Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1849, p.169

2018

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Supertrees Based on the Subtree Prune-and-Regraft Distance

Systematic biology, 2014-07, Vol.63 (4), p.566-581

2014

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Interactions in the microbiome: communities of organisms and communities of genes

FEMS microbiology reviews, 2014-01, Vol.38 (1), p.90-118

2014

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GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

PloS one, 2013-07, Vol.8 (7), p.e69885

2013

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Applications of random forest feature selection for fine‐scale genetic population assignment

Evolutionary applications, 2018-02, Vol.11 (2), p.153-165

2018

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Compact and automated eDNA sampler for in situ monitoring of marine environments

Scientific reports, 2023-03, Vol.13 (1), p.5210-13, Article 5210

2023

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Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens

PloS one, 2015-06, Vol.10 (6), p.e0128773-e0128773

2015

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Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning

Landscape ecology, 2023-09, Vol.38 (9), p.2189-2205

2023

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Highways of Gene Sharing in Prokaryotes

Proceedings of the National Academy of Sciences - PNAS, 2005-10, Vol.102 (40), p.14332-14337

2005

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Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

BMC genomics, 2012-07, Vol.13 (1), p.327-327, Article 327

2012

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Telling the whole story in a 10,000-genome world

Biology direct, 2011-06, Vol.6 (1), p.34-34

Beiko, Robert G

2011

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Phylogenetic identification of lateral genetic transfer events

BMC evolutionary biology, 2006-02, Vol.6 (1), p.15, Article 15

2006

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Vaginal microbiota in women with spontaneous preterm labor versus those with term labor in Kenya: a case control study

BMC microbiology, 2022-11, Vol.22 (1), p.1-270, Article 270

2022

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PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data

Bioinformatics, 2020-05, Vol.36 (10), p.3043-3048

2020

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Lateral genetic transfer: open issues

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2009-08, Vol.364 (1527), p.2241-2251

2009

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Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America

Molecular ecology, 2018-10, Vol.27 (20), p.4026-4040

2018

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Impaired Intestinal Akkermansia muciniphila and Aryl Hydrocarbon Receptor Ligands Contribute to Nonalcoholic Fatty Liver Disease in Mice

mSystems, 2021-02, Vol.6 (1)

2021

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Classifying short genomic fragments from novel lineages using composition and homology

BMC bioinformatics, 2011-08, Vol.12 (1), p.328-328, Article 328

2011

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GenGIS: A geospatial information system for genomic data

Genome Research, 2009-10, Vol.19 (10), p.1896-1904

2009

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Deciphering Active Prophages from Metagenomes

mSystems, 2022-04, Vol.7 (2), p.e0008422-e0008422

2022

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STAMP: statistical analysis of taxonomic and functional profiles

A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria

Identifying biologically relevant differences between metagenomic communities

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity

Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

Supertrees Based on the Subtree Prune-and-Regraft Distance

Interactions in the microbiome: communities of organisms and communities of genes

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

Applications of random forest feature selection for fine‐scale genetic population assignment

Compact and automated eDNA sampler for in situ monitoring of marine environments

Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens

Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning

Highways of Gene Sharing in Prokaryotes

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

Telling the whole story in a 10,000-genome world

Phylogenetic identification of lateral genetic transfer events

Vaginal microbiota in women with spontaneous preterm labor versus those with term labor in Kenya: a case control study

PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data

Lateral genetic transfer: open issues

Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America

Impaired Intestinal Akkermansia muciniphila and Aryl Hydrocarbon Receptor Ligands Contribute to Nonalcoholic Fatty Liver Disease in Mice

Classifying short genomic fragments from novel lineages using composition and homology

GenGIS: A geospatial information system for genomic data

Deciphering Active Prophages from Metagenomes

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