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GOstat: find statistically overrepresented Gene Ontologies within a group of genes

Bioinformatics, 2004-06, Vol.20 (9), p.1464-1465

2004

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Stable feature selection utilizing Graph Convolutional Neural Network and Layer-wise Relevance Propagation for biomarker discovery in breast cancer

Artificial intelligence in medicine, 2024-05, Vol.151, p.102840, Article 102840

2024

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Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks

PloS one, 2021-10, Vol.16 (10), p.e0258623-e0258623

2021

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Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer

Genome medicine, 2021-03, Vol.13 (1), p.42-42, Article 42

2021

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Impact of RNA degradation on gene expression profiling

BMC genomics, 2010-08, Vol.3 (1), p.36-36, Article 36

2010

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Preoperative Versus Postoperative Chemoradiotherapy for Locally Advanced Rectal Cancer: Results of the German CAO/ARO/AIO-94 Randomized Phase III Trial After a Median Follow-Up of 11 Years

Journal of clinical oncology, 2012-06, Vol.30 (16), p.1926-1933

2012

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pwOmics: an R package for pathway-based integration of time-series omics data using public database knowledge

Bioinformatics, 2015-09, Vol.31 (18), p.3072-3074

2015

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CODEX: COunterfactual Deep learning for the in silico EXploration of cancer cell line perturbations

Bioinformatics (Oxford, England), 2024-06, Vol.40 (Supplement_1), p.i91-i99

2024

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Tumor regression grading after preoperative chemoradiotherapy for locally advanced rectal carcinoma revisited: updated results of the CAO/ARO/AIO-94 trial

Journal of clinical oncology, 2014-05, Vol.32 (15), p.1554-1562

2014

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GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products

BMC bioinformatics, 2007-05, Vol.8 (1), p.166-166, Article 166

2007

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Differences in the Reponses to Apheresis Therapy of Patients With 3 Histopathologically Classified Immunopathological Patterns of Multiple Sclerosis

JAMA neurology, 2018-04, Vol.75 (4), p.428

2018

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A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells

PloS one, 2018-05, Vol.13 (5), p.e0197162-e0197162

2018

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Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11)

2023

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Comparative study on gene set and pathway topology-based enrichment methods

BMC bioinformatics, 2015-10, Vol.16 (1), p.334-334, Article 334

2015

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Working with Ontologies

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1525, p.123

2017

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Constructing temporal regulatory cascades in the context of development and cell differentiation

PloS one, 2020-04, Vol.15 (4), p.e0231326-e0231326

2020

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Discriminating malignant and benign clinical T1 renal masses on computed tomography: A pragmatic radiomics and machine learning approach

Medicine (Baltimore), 2020-04, Vol.99 (16), p.e19725-e19725

2020

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Molecular differences of angiogenic versus vessel co-opting colorectal cancer liver metastases at single-cell resolution

Molecular cancer, 2023-01, Vol.22 (1), p.17-17, Article 17

2023

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Impact of frailty on short- and long-term morbidity and mortality after transcatheter aortic valve implantation: risk assessment by Katz Index of activities of daily living

EuroIntervention, 2014-09, Vol.10 (5), p.609-619

2014

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Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes

BMC bioinformatics, 2011-07, Vol.12 (1), p.288-288, Article 288

2011

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WNT11/ROR2 signaling is associated with tumor invasion and poor survival in breast cancer

Journal of experimental & clinical cancer research, 2021-12, Vol.40 (1), p.395-395, Article 395

2021

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IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

Frontiers in genetics, 2021-06, Vol.12, p.670240-670240

2021

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Chemoradiotherapy Resistance in Colorectal Cancer Cells is Mediated by Wnt/β-catenin Signaling

Molecular cancer research, 2017-11, Vol.15 (11), p.1481-1490

2017

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SeqCAT: Sequence Conversion and Analysis Toolbox

Nucleic acids research, 2024-07, Vol.52 (W1), p.W116-W120

2024

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GOstat: find statistically overrepresented Gene Ontologies within a group of genes

Stable feature selection utilizing Graph Convolutional Neural Network and Layer-wise Relevance Propagation for biomarker discovery in breast cancer

Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks

Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer

Impact of RNA degradation on gene expression profiling

Preoperative Versus Postoperative Chemoradiotherapy for Locally Advanced Rectal Cancer: Results of the German CAO/ARO/AIO-94 Randomized Phase III Trial After a Median Follow-Up of 11 Years

pwOmics: an R package for pathway-based integration of time-series omics data using public database knowledge

CODEX: COunterfactual Deep learning for the in silico EXploration of cancer cell line perturbations

Tumor regression grading after preoperative chemoradiotherapy for locally advanced rectal carcinoma revisited: updated results of the CAO/ARO/AIO-94 trial

GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products

Differences in the Reponses to Apheresis Therapy of Patients With 3 Histopathologically Classified Immunopathological Patterns of Multiple Sclerosis

A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells

Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification

Comparative study on gene set and pathway topology-based enrichment methods

Working with Ontologies

Constructing temporal regulatory cascades in the context of development and cell differentiation

Discriminating malignant and benign clinical T1 renal masses on computed tomography: A pragmatic radiomics and machine learning approach

Molecular differences of angiogenic versus vessel co-opting colorectal cancer liver metastases at single-cell resolution

PI3K: A master regulator of brain metastasis‐promoting macrophages/microglia

Impact of frailty on short- and long-term morbidity and mortality after transcatheter aortic valve implantation: risk assessment by Katz Index of activities of daily living

Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes

WNT11/ROR2 signaling is associated with tumor invasion and poor survival in breast cancer

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

Chemoradiotherapy Resistance in Colorectal Cancer Cells is Mediated by Wnt/β-catenin Signaling

SeqCAT: Sequence Conversion and Analysis Toolbox

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