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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

PloS one, 2010-11, Vol.5 (11), p.e13984

2010

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Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

Molecular systems biology, 2013, Vol.9 (1), p.637-n/a

2013

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Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Nature protocols, 2019-02, Vol.14 (2), p.482-517

2019

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Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Cell, 2016-01, Vol.164 (1-2), p.293-309

2016

Volltextzugriff (PDF)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

BMC bioinformatics, 2011-11, Vol.12 (1), p.436-436, Article 436

2011

Volltextzugriff (PDF)

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008205-e1008205

2020

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An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology

BMC bioinformatics, 2010-11, Vol.11 (1), p.562-562, Article 562

2010

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The mutational landscape of phosphorylation signaling in cancer

Scientific reports, 2013-10, Vol.3 (1), p.2651-2651, Article 2651

2013

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Cytoscape Web: an interactive web-based network browser

Bioinformatics, 2010-09, Vol.26 (18), p.2347-2348

2010

Volltextzugriff (PDF)

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

Nucleic acids research, 2020-01, Vol.48 (D1), p.D489

2020

Volltextzugriff (PDF)

Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic

PLoS genetics, 2019-03, Vol.15 (3), p.e1007530

2019

Volltextzugriff (PDF)

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W214

2010

Volltextzugriff (PDF)

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations [version 1; peer review: 2 approved]

F1000 research, 2016, Vol.5, p.1717-1717

2016

Volltextzugriff (PDF)

Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

Nature communications, 2021-05, Vol.12 (1), p.3155-3155, Article 3155

2021

Volltextzugriff (PDF)

Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

Cell reports (Cambridge), 2017-12, Vol.21 (13), p.3970-3986

2017

Volltextzugriff (PDF)

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (3), p.851-856

2015

Volltextzugriff (PDF)

Comprehensive identification of mutational cancer driver genes across 12 tumor types

Scientific reports, 2013-10, Vol.3 (1), p.2650, Article 2650

2013

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Attenuation of miR-126 Activity Expands HSC In Vivo without Exhaustion

Cell stem cell, 2012-12, Vol.11 (6), p.799-811

2012

Volltextzugriff (PDF)

An automated method for finding molecular complexes in large protein interaction networks

BMC bioinformatics, 2003-01, Vol.4 (1), p.2-2, Article 2

2003

Volltextzugriff (PDF)

Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities

Structure (London), 2017-10, Vol.25 (10), p.1598-1610.e3

2017

Volltextzugriff (PDF)

Generation of Functional Liver Sinusoidal Endothelial Cells from Human Pluripotent Stem-Cell-Derived Venous Angioblasts

Cell stem cell, 2020-08, Vol.27 (2), p.254-269.e9

2020

Volltextzugriff (PDF)

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

PLoS genetics, 2015-01, Vol.11 (1), p.e1004919-e1004919

2015

Volltextzugriff (PDF)

BIONIC: biological network integration using convolutions

Nature methods, 2022-10, Vol.19 (10), p.1250

2022

Volltextzugriff (PDF)

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

Nature methods, 2015-06, Vol.12 (6), p.531

2015

Volltextzugriff (PDF)

Functional complexes between YAP2 and ZO-2 are PDZ domain-dependent, and regulate YAP2 nuclear localization and signalling

Biochemical journal, 2010-12, Vol.432 (3), p.461-478

2010

Volltextzugriff (PDF)

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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology

The mutational landscape of phosphorylation signaling in cancer

Cytoscape Web: an interactive web-based network browser

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations [version 1; peer review: 2 approved]

Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Comprehensive identification of mutational cancer driver genes across 12 tumor types

Attenuation of miR-126 Activity Expands HSC In Vivo without Exhaustion

An automated method for finding molecular complexes in large protein interaction networks

Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities

Generation of Functional Liver Sinusoidal Endothelial Cells from Human Pluripotent Stem-Cell-Derived Venous Angioblasts

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

BIONIC: biological network integration using convolutions

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

Functional complexes between YAP2 and ZO-2 are PDZ domain-dependent, and regulate YAP2 nuclear localization and signalling

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