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DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

Microbiome, 2018-02, Vol.6 (1), p.23-23, Article 23

2018

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Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes

mSphere, 2019-05, Vol.4 (3)

2019

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MetaStorm: A Public Resource for Customizable Metagenomics Annotation

PloS one, 2016-09, Vol.11 (9), p.e0162442-e0162442

2016

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Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus

Molecules (Basel, Switzerland), 2017-08, Vol.22 (8), p.1292

2017

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MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples

Journal of computational biology, 2021-11, Vol.28 (11), p.1063

2021

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Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm

Microbiome, 2019-08, Vol.7 (1), p.123-123, Article 123

2019

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An in-depth map of polyadenylation sites in cancer

Nucleic acids research, 2012-09, Vol.40 (17), p.8460

2012

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Secure coding practices in Java: challenges and vulnerabilities

2018 IEEE/ACM 40th International Conference on Software Engineering (ICSE), 2018, p.372-383

2018

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IEEE_Xplore

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

Emerging infectious diseases, 2019-11, Vol.25 (11), p.2013-2020

2019

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Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro

PloS one, 2020-06, Vol.15 (6), p.e0234046-e0234046

2020

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A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children

Antimicrobial agents and chemotherapy, 2020-03, Vol.64 (4)

2020

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The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii

Anaerobe, 2016-12, Vol.42, p.130-141

2016

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Analysis of Temporal Changes in Growth and Gene Expression for Commensal Gut Microbes in Response to the Polyphenol Naringenin

Microbiology insights, 2018, Vol.11, p.1178636118775100-1178636118775100

2018

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Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs

PloS one, 2015-03, Vol.10 (3), p.e0120296-e0120296

2015

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Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes

Environmental science & technology, 2022-11, Vol.56 (21), p.14982-14993

2022

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Abstract 5359: Translating state-of-the-art deep learning predictions of treatment efficacy to clinical practice

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.5359-5359

2023

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Abstract 1174: Enhancing the utilization of deep learning to predict patient response in small immunotherapy cohorts using real-world data

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.1174-1174

2023

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Abstract 5360: Improved identification of CHIP mutations from cell-free DNA without matched normal samples using machine learning

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.5360-5360

2023

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Enhanced GII.4 human norovirus infection in gnotobiotic pigs transplanted with a human gut microbiota

Journal of general virology, 2019-11, Vol.100 (11), p.1530-1540

2019

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Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells

RNA (Cambridge), 2015-06, Vol.21 (6), p.1159-1172

2015

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Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes

Scientific reports, 2016-12, Vol.6 (1), p.38432-38432, Article 38432

2016

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Genome-Wide Transcript Profiling Reveals Novel Breast Cancer-Associated Intronic Sense RNAs: e0120296

PloS one, 2015-03, Vol.10 (3)

2015

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Abstract 5395: Improving survival prediction using flexible late fusion machine learning framework for multi-omics data integration

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.5395-5395

2023

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DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus

MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples

Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm

An in-depth map of polyadenylation sites in cancer

Secure coding practices in Java: challenges and vulnerabilities

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro

A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children

The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii

Analysis of Temporal Changes in Growth and Gene Expression for Commensal Gut Microbes in Response to the Polyphenol Naringenin

Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs

Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes

Abstract 5359: Translating state-of-the-art deep learning predictions of treatment efficacy to clinical practice

Abstract 1174: Enhancing the utilization of deep learning to predict patient response in small immunotherapy cohorts using real-world data

Abstract 5360: Improved identification of CHIP mutations from cell-free DNA without matched normal samples using machine learning

Enhanced GII.4 human norovirus infection in gnotobiotic pigs transplanted with a human gut microbiota

Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells

Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes

Genome-Wide Transcript Profiling Reveals Novel Breast Cancer-Associated Intronic Sense RNAs: e0120296

Abstract 5395: Improving survival prediction using flexible late fusion machine learning framework for multi-omics data integration

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