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The three-dimensional genome: regulating gene expression during pluripotency and development

Development (Cambridge), 2017-10, Vol.144 (20), p.3646-3658

2017

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A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

Science (American Association for the Advancement of Science), 2013-06, Vol.340 (6137), p.1195-1195

2013

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Polymer physics predicts the effects of structural variants on chromatin architecture

Nature genetics, 2018-05, Vol.50 (5), p.662-667

2018

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Formation of new chromatin domains determines pathogenicity of genomic duplications

Nature (London), 2016-10, Vol.538 (7624), p.265-269

2016

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Cell-specific alterations in Pitx1 regulatory landscape activation caused by the loss of a single enhancer

Nature communications, 2021-12, Vol.12 (1), p.7235-15, Article 7235

2021

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Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations

Nature cell biology, 2019-03, Vol.21 (3), p.305-310

2019

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Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding

Genome research, 2017-02, Vol.27 (2), p.223-233

2017

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Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

Nature genetics, 2018-10, Vol.50 (10), p.1463-1473

2018

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Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development

Nature communications, 2024-06, Vol.15 (1), p.4820-15, Article 4820

2024

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Context-dependent enhancer function revealed by targeted inter-TAD relocation

Nature communications, 2022-06, Vol.13 (1), p.3488-3488, Article 3488

2022

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Similarities and differences in the regulation of HoxD genes during chick and mouse limb development

PLoS biology, 2018-11, Vol.16 (11), p.e3000004-e3000004

2018

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Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice

Cell reports (Cambridge), 2015-02, Vol.10 (5), p.833-839

2015

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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival

Nature communications, 2024-10, Vol.15 (1), p.8793-24, Article 8793

2024

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Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF

PLoS genetics, 2017-01, Vol.13 (1), p.e1006567-e1006567

2017

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Chromatin topology in development and disease

Current opinion in genetics & development, 2019-04, Vol.55, p.32-38

2019

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Genetic cold cases: lessons from solving complex congenital limb disorders

Genes & development, 2023-04, Vol.37 (7-8), p.261-276

2023

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CRISPR/Cas9 Genome Editing in Embryonic Stem Cells

Methods in molecular biology (Clifton, N.J.), 2017-01, Vol.1468, p.221

2017

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Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption

Proceedings of the National Academy of Sciences - PNAS, 2018-01, Vol.115 (5), p.839-841

2018

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MAZ regulates chromatin domain insulation and genome architecture

Nature genetics, 2022-02, Vol.54 (2), p.96-97

2022

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SnapShot: Hox Gene Regulation

Cell, 2014-02, Vol.156 (4), p.856-856.e1

2014

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Preformed chromatin topology assists transcriptional robustness of Shh during limb development

Proceedings of the National Academy of Sciences - PNAS, 2019-06, Vol.116 (25), p.12390-12399

2019

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Inhibitory SMAD6 interferes with BMP-dependent generation of muscle progenitor cells and perturbs proximodistal pattern of murine limb muscles

Development (Cambridge), 2023-06, Vol.150 (11)

2023

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Modeling Single-Molecule Conformations of the HoxD Region in Mouse Embryonic Stem and Cortical Neuronal Cells

Cell reports (Cambridge), 2019-08, Vol.28 (6), p.1574-1583.e4

2019

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Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cells

Proceedings of the National Academy of Sciences - PNAS, 2017-03, Vol.114 (12), p.3139-3144

2017

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The three-dimensional genome: regulating gene expression during pluripotency and development

A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

Polymer physics predicts the effects of structural variants on chromatin architecture

Formation of new chromatin domains determines pathogenicity of genomic duplications

Cell-specific alterations in Pitx1 regulatory landscape activation caused by the loss of a single enhancer

Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations

Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development

Context-dependent enhancer function revealed by targeted inter-TAD relocation

Similarities and differences in the regulation of HoxD genes during chick and mouse limb development

Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice

A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival

Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF

Chromatin topology in development and disease

Genetic cold cases: lessons from solving complex congenital limb disorders

CRISPR/Cas9 Genome Editing in Embryonic Stem Cells

Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption

MAZ regulates chromatin domain insulation and genome architecture

SnapShot: Hox Gene Regulation

Preformed chromatin topology assists transcriptional robustness of Shh during limb development

Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator

Inhibitory SMAD6 interferes with BMP-dependent generation of muscle progenitor cells and perturbs proximodistal pattern of murine limb muscles

Modeling Single-Molecule Conformations of the HoxD Region in Mouse Embryonic Stem and Cortical Neuronal Cells

Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cells

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