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On the Dielectric “Constant” of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi

Journal of chemical theory and computation, 2013-04, Vol.9 (4), p.2126-2136

2013

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On the pH-optimum of activity and stability of proteins

Proteins, structure, function, and bioinformatics, 2010-09, Vol.78 (12), p.2699-2706

2010

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SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability

International journal of molecular sciences, 2021-01, Vol.22 (2), p.606

2021

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Most Monogenic Disorders Are Caused by Mutations Altering Protein Folding Free Energy

International journal of molecular sciences, 2024-02, Vol.25 (4), p.1963

2024

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Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method

PLoS computational biology, 2015-07, Vol.11 (7), p.e1004276

2015

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Molecular Mechanisms of Disease-Causing Missense Mutations

Journal of molecular biology, 2013-11, Vol.425 (21), p.3919-3936

2013

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Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins

Current opinion in structural biology, 2015-06, Vol.32, p.18-24

2015

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On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns

Human mutation, 2015-05, Vol.36 (5), p.524-534

2015

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Protonation and pK changes in protein–ligand binding

Quarterly reviews of biophysics, 2013-05, Vol.46 (2), p.181-209

2013

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SAAFEC: Predicting the Effect of Single Point Mutations on Protein Folding Free Energy Using a Knowledge-Modified MM/PBSA Approach

International journal of molecular sciences, 2016-04, Vol.17 (4), p.512-512

2016

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SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations

International journal of molecular sciences, 2016-04, Vol.17 (4), p.547-547

2016

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Electrostatics in Computational Biophysics and Its Implications for Disease Effects

International journal of molecular sciences, 2022-09, Vol.23 (18), p.10347

2022

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SAAMBE-3D: Predicting Effect of Mutations on Protein-Protein Interactions

International journal of molecular sciences, 2020-04, Vol.21 (7), p.2563

2020

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The role of protonation states in ligand-receptor recognition and binding

Current pharmaceutical design, 2013, Vol.19 (23), p.4182-4190

2013

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Opioid Addiction and Opioid Receptor Dimerization: Structural Modeling of the OPRD1 and OPRM1 Heterodimer and Its Signaling Pathways

International journal of molecular sciences, 2021-09, Vol.22 (19), p.10290

2021

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Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy

Nature communications, 2020-07, Vol.11 (1), p.3698-3698, Article 3698

2020

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Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions

Scientific reports, 2016-08, Vol.6 (1), p.31523-31523, Article 31523

2016

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On the role of electrostatics in protein–protein interactions

Physical biology, 2011-06, Vol.8 (3), p.035001-035001

2011

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Processivity vs. Beating: Comparing Cytoplasmic and Axonemal Dynein Microtubule Binding Domain Association with Microtubule

International journal of molecular sciences, 2019-03, Vol.20 (5), p.1090

2019

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Predicting the Effect of Single Mutations on Protein Stability and Binding with Respect to Types of Mutations

International journal of molecular sciences, 2023-07, Vol.24 (15), p.12073

2023

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Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases

International journal of molecular sciences, 2019-01, Vol.20 (3), p.548

2019

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Modeling Effects of Human Single Nucleotide Polymorphisms on Protein-Protein Interactions

Biophysical journal, 2009-03, Vol.96 (6), p.2178-2188

2009

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Predicting folding free energy changes upon single point mutations

Bioinformatics (Oxford, England), 2012-03, Vol.28 (5), p.664-671

2012

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Evaluation of performance of leading algorithms for variant pathogenicity predictions and designing a combinatory predictor method: application to Rett syndrome variants

PeerJ (San Francisco, CA), 2019-11, Vol.7, p.e8106-e8106, Article e8106

2019

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PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006615-e1006615

2018

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On the Dielectric “Constant” of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi

On the pH-optimum of activity and stability of proteins

SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability

Most Monogenic Disorders Are Caused by Mutations Altering Protein Folding Free Energy

Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method

Molecular Mechanisms of Disease-Causing Missense Mutations

Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins

On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns

Protonation and pK changes in protein–ligand binding

SAAFEC: Predicting the Effect of Single Point Mutations on Protein Folding Free Energy Using a Knowledge-Modified MM/PBSA Approach

SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations

Electrostatics in Computational Biophysics and Its Implications for Disease Effects

SAAMBE-3D: Predicting Effect of Mutations on Protein-Protein Interactions

The role of protonation states in ligand-receptor recognition and binding

Opioid Addiction and Opioid Receptor Dimerization: Structural Modeling of the OPRD1 and OPRM1 Heterodimer and Its Signaling Pathways

Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy

Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions

On the role of electrostatics in protein–protein interactions

Processivity vs. Beating: Comparing Cytoplasmic and Axonemal Dynein Microtubule Binding Domain Association with Microtubule

Predicting the Effect of Single Mutations on Protein Stability and Binding with Respect to Types of Mutations

Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases

Modeling Effects of Human Single Nucleotide Polymorphisms on Protein-Protein Interactions

Predicting folding free energy changes upon single point mutations

Evaluation of performance of leading algorithms for variant pathogenicity predictions and designing a combinatory predictor method: application to Rett syndrome variants

PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions

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