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Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells

Journal of proteome research, 2015-11, Vol.14 (11), p.4472-4485

2015

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Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

Journal of proteome research, 2012-11, Vol.11 (11), p.5145-5156

2012

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Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments

Journal of proteome research, 2016-08, Vol.15 (8), p.2537-2547

2016

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Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins

Neuron (Cambridge, Mass.), 2014-10, Vol.84 (2), p.386-398

2014

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Global Ion Suppression Limits the Potential of Mass Spectrometry Based Phosphoproteomics

Journal of proteome research, 2019-01, Vol.18 (1), p.493-507, Article acs.jproteome.8b00812

2019

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Quantitative isoform-profiling of highly diversified recognition molecules

eLife, 2015-05, Vol.4, p.e07794-e07794

2015

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QuickMod: A Tool for Open Modification Spectrum Library Searches

Journal of proteome research, 2011-07, Vol.10 (7), p.2913-2921

2011

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Quantitative proteomic and phosphoproteomic comparison of human colon cancer DLD-1 cells differing in ploidy and chromosome stability

Molecular biology of the cell, 2018-05, Vol.29 (9), p.1031-1047

2018

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Evaluation of Data-Dependent and -Independent Mass Spectrometric Workflows for Sensitive Quantification of Proteins and Phosphorylation Sites

Journal of proteome research, 2014-12, Vol.13 (12), p.5973-5988

2014

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Correction to “Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells”

Journal of proteome research, 2016-02, Vol.15 (2), p.679-679

2016

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Critical assessment of proteome-wide label-free absolute abundance estimation strategies

Proteomics (Weinheim), 2013-09, Vol.13 (17), p.2567-2578

2013

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PAX8 and MECOM are interaction partners driving ovarian cancer

Nature communications, 2021-04, Vol.12 (1), p.2442-2442, Article 2442

2021

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The quantitative and condition-dependent Escherichia coli proteome

Nature biotechnology, 2016-01, Vol.34 (1), p.104-110

2016

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An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

Proteomics (Weinheim), 2011-10, Vol.11 (20), p.4085-4095

2011

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Unrestricted identification of modified proteins using MS/MS

Proteomics (Weinheim), 2010-02, Vol.10 (4), p.671-686

2010

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Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate

The Journal of biological chemistry, 2019-02, Vol.294 (7), p.2279-2292

2019

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Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas

Molecular & cellular proteomics, 2013-06, Vol.12 (6), p.1741-1751

2013

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Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites

Data in brief, 2015-12, Vol.5 (C), p.297-304

2015

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Systems-Level Overview of Host Protein Phosphorylation During Shigella flexneri Infection Revealed by Phosphoproteomics

Molecular & cellular proteomics, 2013-10, Vol.12 (10), p.2952-2968

2013

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Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome

Molecular & cellular proteomics, 2013-06, Vol.12 (6), p.1741-1751

2013

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A mammalian transcription factor-specific peptide repository for targeted proteomics

Proteomics (Weinheim), 2015-02, Vol.15 (4), p.752-756

2015

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Small molecule induced STING degradation facilitated by the HECT ligase HERC4

Nature communications, 2024-05, Vol.15 (1), p.4584-16, Article 4584

2024

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Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry

Methods (San Diego, Calif.), 2015-09, Vol.85, p.100-107

2015

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Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model

Molecular & cellular proteomics, 2024-01, Vol.23 (1), p.100683-100683, Article 100683

2024

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Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins

Journal of visualized experiments, 2015-03 (97)

2015

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Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments

Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins

Global Ion Suppression Limits the Potential of Mass Spectrometry Based Phosphoproteomics

Quantitative isoform-profiling of highly diversified recognition molecules

QuickMod: A Tool for Open Modification Spectrum Library Searches

Quantitative proteomic and phosphoproteomic comparison of human colon cancer DLD-1 cells differing in ploidy and chromosome stability

Evaluation of Data-Dependent and -Independent Mass Spectrometric Workflows for Sensitive Quantification of Proteins and Phosphorylation Sites

Correction to “Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells”

Critical assessment of proteome-wide label-free absolute abundance estimation strategies

PAX8 and MECOM are interaction partners driving ovarian cancer

The quantitative and condition-dependent Escherichia coli proteome

An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

Unrestricted identification of modified proteins using MS/MS

Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites

Systems-Level Overview of Host Protein Phosphorylation During Shigella flexneri Infection Revealed by Phosphoproteomics

Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome

A mammalian transcription factor-specific peptide repository for targeted proteomics

Small molecule induced STING degradation facilitated by the HECT ligase HERC4

Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry

Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model

Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins

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