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Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics

PLoS genetics, 2022-04, Vol.18 (4), p.e1010156-e1010156

2022

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Genome-wide identification of bacterial plant colonization genes

PLoS biology, 2017-09, Vol.15 (9), p.e2002860

2017

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Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria

Nature protocols, 2021-06, Vol.16 (6), p.3049-3071

2021

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High-throughput mapping of the phage resistance landscape in E. coli

PLoS biology, 2020-10, Vol.18 (10), p.e3000877

2020

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Selective carbon sources influence the end products of microbial nitrate respiration

The ISME Journal, 2020-08, Vol.14 (8), p.2034-2045

2020

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The Epigenomic Landscape of Prokaryotes

PLoS genetics, 2016-02, Vol.12 (2), p.e1005854-e1005854

2016

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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

PLoS genetics, 2023-08, Vol.19 (8), p.e1010909-e1010909

2023

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Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

PLoS genetics, 2018-01, Vol.14 (1), p.e1007147-e1007147

2018

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Four families of folate-independent methionine synthases

PLoS genetics, 2021-02, Vol.17 (2), p.e1009342-e1009342

2021

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Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

Nature communications, 2019-01, Vol.10 (1), p.308-308, Article 308

2019

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Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species

PloS one, 2020-09, Vol.15 (9), p.e0239998-e0239998

2020

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Species- and site-specific genome editing in complex bacterial communities

Nature microbiology, 2022-01, Vol.7 (1), p.34

2022

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Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins

The ISME Journal, 2021-08, Vol.15 (8), p.2289-2305

2021

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GapMind: Automated Annotation of Amino Acid Biosynthesis

mSystems, 2020-06, Vol.5 (3)

2020

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Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance

Nature communications, 2024-08, Vol.15 (1), p.6618-17, Article 6618

2024

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A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis

PloS one, 2023-10, Vol.18 (10), p.e0292585-e0292585

2023

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Variation among Desulfovibrio Species in Electron Transfer Systems Used for Syntrophic Growth

Journal of Bacteriology, 2013-03, Vol.195 (5), p.990-1004

2013

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A Comparison of the Costs and Benefits of Bacterial Gene Expression

PloS one, 2016-10, Vol.11 (10), p.e0164314-e0164314

2016

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Mechanisms of Haploinsufficiency Revealed by Genome-Wide Profiling in Yeast

Genetics (Austin), 2005-04, Vol.169 (4), p.1915-1925

2005

Volltextzugriff (PDF)

Indirect and suboptimal control of gene expression is widespread in bacteria

Molecular systems biology, 2013, Vol.9 (1), p.660-n/a

2013

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Validating regulatory predictions from diverse bacteria with mutant fitness data

PloS one, 2017-05, Vol.12 (5), p.e0178258-e0178258

2017

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Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

mBio, 2016-04, Vol.7 (2), p.e02234-e02215

2016

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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes

Frontiers in microbiology, 2021-03, Vol.12, p.598180-598180

2021

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Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

Cell reports (Cambridge), 2024-01, Vol.43 (1), p.113517-113517, Article 113517

2024

Volltextzugriff (PDF)

Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics

Cell reports (Cambridge), 2024-01, Vol.43 (1), p.113519-113519, Article 113519

2024

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Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics

Genome-wide identification of bacterial plant colonization genes

Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria

High-throughput mapping of the phage resistance landscape in E. coli

Selective carbon sources influence the end products of microbial nitrate respiration

The Epigenomic Landscape of Prokaryotes

Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

Four families of folate-independent methionine synthases

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species

Species- and site-specific genome editing in complex bacterial communities

Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins

GapMind: Automated Annotation of Amino Acid Biosynthesis

Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance

A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis

Variation among Desulfovibrio Species in Electron Transfer Systems Used for Syntrophic Growth

A Comparison of the Costs and Benefits of Bacterial Gene Expression

Mechanisms of Haploinsufficiency Revealed by Genome-Wide Profiling in Yeast

Indirect and suboptimal control of gene expression is widespread in bacteria

Validating regulatory predictions from diverse bacteria with mutant fitness data

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes

Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics

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