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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D206-D214

2014

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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Scientific reports, 2015-02, Vol.5 (1), p.8365-8365, Article 8365

2015

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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Nucleic acids research, 2017-01, Vol.45 (D1), p.D535-D542

2017

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SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

PloS one, 2012-10, Vol.7 (10), p.e48053-e48053

2012

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PATRIC, the bacterial bioinformatics database and analysis resource

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D581-D591

2014

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The RAST Server: rapid annotations using subsystems technology

BMC genomics, 2008-02, Vol.9 (1), p.75-75, Article 75

2008

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PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

Frontiers in microbiology, 2016-02, Vol.7, p.118-118

2016

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Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

PloS one, 2021-04, Vol.16 (4), p.e0250092-e0250092

2021

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The Use of Gene Clusters to Infer Functional Coupling

Proceedings of the National Academy of Sciences - PNAS, 1999-03, Vol.96 (6), p.2896-2901

1999

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A machine learning-based service for estimating quality of genomes using PATRIC

BMC bioinformatics, 2019-10, Vol.20 (1), p.486-486, Article 486

2019

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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

Nature biotechnology, 2004-12, Vol.22 (12), p.1554-1558

2004

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PATRIC as a unique resource for studying antimicrobial resistance

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1094-1102

2019

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WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

Nucleic acids research, 2000-01, Vol.28 (1), p.123-125

2000

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Detection of enteric viruses and bacterial indicators in German environmental waters

Archives of virology, 2005-05, Vol.150 (5), p.929-947

2005

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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model

BMC genomics, 2011-04, Vol.12 (1), p.187-187, Article 187

2011

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Robust FEM/BEM Coupling for Magnetostatics on Multiconnected Domains

IEEE transactions on magnetics, 2010-08, Vol.46 (8), p.3177-3180

2010

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The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

Nucleic acids research, 2007-01, Vol.35 (Database issue), p.D347-D353

2007

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Genome of Non-O1 Vibrio cholerae NRT36S Demonstrates the Presence of Pathogenic Mechanisms That Are Distinct from Those of O1 Vibrio cholerae

Infection and Immunity, 2007-05, Vol.75 (5), p.2645-2647

2007

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A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

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Access to Breast Cancer Screening Services for Women With Disabilities

Journal of obstetric, gynecologic, and neonatal nursing, 2005-07, Vol.34 (4), p.453-464

2005

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Real Time Metagenomics: Using k-mers to annotate metagenomes

Bioinformatics, 2012-12, Vol.28 (24), p.3316-3317

2012

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Nonlinear Eddy Current Analysis by BEM Utilizing Adaptive Equation Technique

IEEE transactions on magnetics, 2009-03, Vol.45 (3), p.1020-1023

2009

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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

PATRIC, the bacterial bioinformatics database and analysis resource

The RAST Server: rapid annotations using subsystems technology

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

The Use of Gene Clusters to Infer Functional Coupling

A machine learning-based service for estimating quality of genomes using PATRIC

Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

PATRIC as a unique resource for studying antimicrobial resistance

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

Detection of enteric viruses and bacterial indicators in German environmental waters

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model

Robust FEM/BEM Coupling for Magnetostatics on Multiconnected Domains

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

Genome of Non-O1 Vibrio cholerae NRT36S Demonstrates the Presence of Pathogenic Mechanisms That Are Distinct from Those of O1 Vibrio cholerae

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

Access to Breast Cancer Screening Services for Women With Disabilities

Real Time Metagenomics: Using k-mers to annotate metagenomes

Nonlinear Eddy Current Analysis by BEM Utilizing Adaptive Equation Technique

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