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Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing

Proceedings of the National Academy of Sciences - PNAS, 2012-03, Vol.109 (10), p.3879-3884

2012

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Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

Genome Biology, 2019-05, Vol.20 (1), p.97-97, Article 97

2019

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Genome-Wide Analysis Uncovers Novel Recurrent Alterations in Primary Central Nervous System Lymphomas

Clinical cancer research, 2015-09, Vol.21 (17), p.3986-3994

2015

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Somatic selection distinguishes oncogenes and tumor suppressor genes

Bioinformatics, 2020-03, Vol.36 (6), p.1712-1717

2020

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Differential expression of microRNAs in tumors from chronically inflamed or genetic (APC(Min/+)) models of colon cancer

PloS one, 2011-04, Vol.6 (4), p.e18501-e18501

2011

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Transposon-Based Genetic Screen in Mice Identifies Genes Altered in Colorectal Cancer

Science (American Association for the Advancement of Science), 2009-03, Vol.323 (5922), p.1747-1750

2009

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A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

Nucleic acids research, 2011-08, Vol.39 (15), p.e100

2011

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Comprehensive profiling of cancer neoantigens from aberrant RNA splicing

Journal for immunotherapy of cancer, 2024-05, Vol.12 (5), p.e008988

2024

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RNA Sequencing Identifies Multiple Fusion Transcripts, Differentially Expressed Genes, and Reduced Expression of Immune Function Genes in BRAF (V600E) Mutant vs BRAF Wild-Type Papillary Thyroid Carcinoma

The journal of clinical endocrinology and metabolism, 2014-02, Vol.99 (2), p.E338-E347

2014

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Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers

Scientific reports, 2015-05, Vol.5 (1), p.9755-9755, Article 9755

2015

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Inflation of tumor mutation burden by tumor-only sequencing in under-represented groups

NPJ precision oncology, 2021-03, Vol.5 (1), p.22-22, Article 22

2021

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Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines

PloS one, 2009-06, Vol.4 (6), p.e5878-e5878

2009

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Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol

PloS one, 2013-08, Vol.8 (8), p.e71745-e71745

2013

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MYC dysregulation in the progression of multiple myeloma

Leukemia, 2020-01, Vol.34 (1), p.322-326

2020

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Lower Exome Sequencing Coverage of Ancestrally African Patients in The Cancer Genome Atlas

JNCI : Journal of the National Cancer Institute, 2022-08, Vol.114 (8), p.1192-1199

2022

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BRAF V600E and TERT Promoter Mutations in Papillary Thyroid Carcinoma in Chinese Patients

PloS one, 2016-04, Vol.11 (4), p.e0153319-e0153319

2016

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ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data

PloS one, 2018-04, Vol.13 (4), p.e0195272-e0195272

2018

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Reliably Detecting Clinically Important Variants Requires Both Combined Variant Calls and Optimized Filtering Strategies

PloS one, 2015-11, Vol.10 (11), p.e0143199-e0143199

2015

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Loss of TNFAIP3 enhances MYD88 L265P -driven signaling in non-Hodgkin lymphoma

Blood cancer journal (New York), 2018-10, Vol.8 (10), p.97-11

2018

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Concurrent Mutations in ATM and Genes Associated with Common γ Chain Signaling in Peripheral T Cell Lymphoma

PloS one, 2015-11, Vol.10 (11), p.e0141906-e0141906

2015

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A Systematic Assessment of Accuracy in Detecting Somatic Mosaic Variants by Deep Amplicon Sequencing: Application to NF2 Gene

PloS one, 2015-06, Vol.10 (6), p.e0129099-e0129099

2015

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An integrated model of the transcriptome of HER2-positive breast cancer

PloS one, 2013-11, Vol.8 (11), p.e79298-e79298

2013

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Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing

Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

Genome-Wide Analysis Uncovers Novel Recurrent Alterations in Primary Central Nervous System Lymphomas

Somatic selection distinguishes oncogenes and tumor suppressor genes

Differential expression of microRNAs in tumors from chronically inflamed or genetic (APC(Min/+)) models of colon cancer

Transposon-Based Genetic Screen in Mice Identifies Genes Altered in Colorectal Cancer

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

Comprehensive profiling of cancer neoantigens from aberrant RNA splicing

RNA Sequencing Identifies Multiple Fusion Transcripts, Differentially Expressed Genes, and Reduced Expression of Immune Function Genes in BRAF (V600E) Mutant vs BRAF Wild-Type Papillary Thyroid Carcinoma

Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations

Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers

Inflation of tumor mutation burden by tumor-only sequencing in under-represented groups

Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol

MYC dysregulation in the progression of multiple myeloma

Lower Exome Sequencing Coverage of Ancestrally African Patients in The Cancer Genome Atlas

Genome-wide analysis reveals recurrent structural abnormalities of TP63 and other p53-related genes in peripheral T-cell lymphomas

BRAF V600E and TERT Promoter Mutations in Papillary Thyroid Carcinoma in Chinese Patients

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer

ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data

Reliably Detecting Clinically Important Variants Requires Both Combined Variant Calls and Optimized Filtering Strategies

Loss of TNFAIP3 enhances MYD88 L265P -driven signaling in non-Hodgkin lymphoma

Concurrent Mutations in ATM and Genes Associated with Common γ Chain Signaling in Peripheral T Cell Lymphoma

A Systematic Assessment of Accuracy in Detecting Somatic Mosaic Variants by Deep Amplicon Sequencing: Application to NF2 Gene

An integrated model of the transcriptome of HER2-positive breast cancer

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