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Transcriptome-wide targets of alternative splicing by RBM4 and possible role in cancer

Genomics (San Diego, Calif.), 2016-04, Vol.107 (4), p.138-144

2016

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Genes influencing circadian differences in blood pressure in hypertensive mice

PloS one, 2011-04, Vol.6 (4), p.e19203-e19203

2011

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Dissecting asthma using focused transgenic modeling and functional genomics

Journal of Allergy and Clinical Immunology, 2005-08, Vol.116 (2), p.305-311

2005

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scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Proceedings of the National Academy of Sciences - PNAS, 2019-05, Vol.116 (20), p.9775-9784

2019

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Investigating higher-order interactions in single-cell data with scHOT

Nature methods, 2020-08, Vol.17 (8), p.799-806

2020

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Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

BMC genomics, 2013-01, Vol.14 Suppl 1 (Suppl 1), p.S9-S9, Article S9

2013

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scReClassify: post hoc cell type classification of single-cell rNA-seq data

BMC genomics, 2019-12, Vol.20 (Suppl 9), p.913-10, Article 913

2019

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Global identification of the genes and pathways differentially expressed in hypothalamus in early and established neurogenic hypertension

Physiological genomics, 2011-06, Vol.43 (12), p.766-771

2011

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Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells

Bioinformatics (Oxford, England), 2017-07, Vol.33 (13), p.1916-1920

2017

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Re-Fraction: A Machine Learning Approach for Deterministic Identification of Protein Homologues and Splice Variants in Large-scale MS-based Proteomics

Journal of proteome research, 2012-05, Vol.11 (5), p.3035-3045

2012

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A Distinctive Alveolar Macrophage Activation State Induced by Cigarette Smoking

American journal of respiratory and critical care medicine, 2005-12, Vol.172 (11), p.1383-1392

2005

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Disease-Specific Gene Expression Profiling in Multiple Models of Lung Disease

American journal of respiratory and critical care medicine, 2008-02, Vol.177 (4), p.376-387

2008

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ISL1 Regulates Peroxisome Proliferator-Activated Receptor γ Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent Mechanisms

Molecular and cellular biology, 2014-10, Vol.34 (19), p.3607-3617

2014

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

Nucleic acids research, 2002-02, Vol.30 (4), p.e15-15

2002

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Molecular Analysis of Gene Expression in the Developing Pontocerebellar Projection System

Neuron (Cambridge, Mass.), 2002-10, Vol.36 (3), p.417-434

2002

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Analysis of Gene Expression in the Developing Mouse Retina

Proceedings of the National Academy of Sciences - PNAS, 2003-04, Vol.100 (9), p.5491-5496

2003

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Gene expression profiles of human inner cell mass cells and embryonic stem cells

Differentiation (London), 2009-07, Vol.78 (1), p.18-23

2009

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Spatial Patterns of Gene Expression in the Olfactory Bulb

Proceedings of the National Academy of Sciences - PNAS, 2004-08, Vol.101 (34), p.12718-12723

2004

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Increased DNA microarray hybridization specificity using sscDNA targets

BMC genomics, 2005-04, Vol.6 (1), p.57-57, Article 57

2005

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The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes

Scientific reports, 2018-01, Vol.8 (1), p.1774-15, Article 1774

2018

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PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

BMC genomics, 2015-08, Vol.16 (1), p.617-617, Article 617

2015

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Characterization of Fam20C expression in odontogenesis and osteogenesis using transgenic mice

International journal of oral science, 2014-12, Vol.7 (2), p.89-94

2014

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MicroRNA miR-93 promotes tumor growth and angiogenesis by targeting integrin-β8

Oncogene, 2011-02, Vol.30 (7), p.806-821

2011

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Foxo3 activity promoted by non-coding effects of circular RNA and Foxo3 pseudogene in the inhibition of tumor growth and angiogenesis

Oncogene, 2016-07, Vol.35 (30), p.3919-3931

2016

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Expression of versican 3'-untranslated region modulates endogenous microRNA functions

PloS one, 2010-10, Vol.5 (10), p.e13599-e13599

2010

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Transcriptome-wide targets of alternative splicing by RBM4 and possible role in cancer

Genes influencing circadian differences in blood pressure in hypertensive mice

Dissecting asthma using focused transgenic modeling and functional genomics

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Investigating higher-order interactions in single-cell data with scHOT

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

scReClassify: post hoc cell type classification of single-cell rNA-seq data

Global identification of the genes and pathways differentially expressed in hypothalamus in early and established neurogenic hypertension

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells

Re-Fraction: A Machine Learning Approach for Deterministic Identification of Protein Homologues and Splice Variants in Large-scale MS-based Proteomics

A Distinctive Alveolar Macrophage Activation State Induced by Cigarette Smoking

Disease-Specific Gene Expression Profiling in Multiple Models of Lung Disease

ISL1 Regulates Peroxisome Proliferator-Activated Receptor γ Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent Mechanisms

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

Molecular Analysis of Gene Expression in the Developing Pontocerebellar Projection System

Analysis of Gene Expression in the Developing Mouse Retina

Gene expression profiles of human inner cell mass cells and embryonic stem cells

Spatial Patterns of Gene Expression in the Olfactory Bulb

Increased DNA microarray hybridization specificity using sscDNA targets

The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

Characterization of Fam20C expression in odontogenesis and osteogenesis using transgenic mice

MicroRNA miR-93 promotes tumor growth and angiogenesis by targeting integrin-β8

Foxo3 activity promoted by non-coding effects of circular RNA and Foxo3 pseudogene in the inhibition of tumor growth and angiogenesis

Expression of versican 3'-untranslated region modulates endogenous microRNA functions

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