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BEAST: Bayesian evolutionary analysis by sampling trees

BMC evolutionary biology, 2007-11, Vol.7 (1), p.214

2007

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Bayesian inference of population size history from multiple loci

BMC evolutionary biology, 2008-10, Vol.8 (1), p.289

2008

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StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

Molecular biology and evolution, 2017-08, Vol.34 (8), p.2101-2114

2017

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bModelTest: Bayesian phylogenetic site model averaging and model comparison

BMC evolutionary biology, 2017-02, Vol.17 (1), p.42

2017

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973

2012

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Bayesian Inference of Species Trees from Multilocus Data

Molecular biology and evolution, 2010-03, Vol.27 (3), p.570-580

2010

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Bayesian Inference of Species Networks from Multilocus Sequence Data

Molecular biology and evolution, 2018-02, Vol.35 (2), p.504-517

2018

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Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Molecular biology and evolution, 2013-02, Vol.30 (2), p.239-243

2013

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Improving the performance of Bayesian phylogenetic inference under relaxed clock models

BMC ecology and evolution, 2020-05, Vol.20 (1), p.1, Article 54

2020

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Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

Molecular biology and evolution, 2016-08, Vol.33 (8), p.2102-2116

2016

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Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences

Molecular biology and evolution, 2006-01, Vol.23 (1), p.7-9

2006

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Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics

Molecular biology and evolution, 2012-02, Vol.29 (2), p.751-761

2012

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Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

Molecular biology and evolution, 2022-08, Vol.39 (8)

2022

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Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Genetics (Austin), 2017-02, Vol.205 (2), p.857-870

2017

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Estimating Epidemic Incidence and Prevalence from Genomic Data

Molecular biology and evolution, 2019-08, Vol.36 (8), p.1804-1816

2019

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Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data

Genetics (Austin), 2002-07, Vol.161 (3), p.1307-1320

2002

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Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models

Genetics (Austin), 2015-02, Vol.199 (2), p.595-607

2015

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A stochastic simulator of birth-death master equations with application to phylodynamics

Molecular biology and evolution, 2013-06, Vol.30 (6), p.1480-1493

2013

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mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory

Molecular biology and evolution, 2008-02, Vol.25 (2), p.468-474

2008

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Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo

Genetics (Austin), 2011-05, Vol.188 (1), p.151-164

2011

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Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

Molecular biology and evolution, 2005-07, Vol.22 (7), p.1561-1568

2005

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Estimating the Basic Reproductive Number from Viral Sequence Data

Molecular biology and evolution, 2012, Vol.29 (1), p.347-357

2012

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A Bayesian phylogenetic method to estimate unknown sequence ages

Molecular biology and evolution, 2011-02, Vol.28 (2), p.879-887

2011

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Bayesian selection of nucleotide substitution models and their site assignments

Molecular biology and evolution, 2013-03, Vol.30 (3), p.669-688

2013

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Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

Molecular biology and evolution, 2007-03, Vol.24 (3), p.845-852

2007

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BEAST: Bayesian evolutionary analysis by sampling trees

Bayesian inference of population size history from multiple loci

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

bModelTest: Bayesian phylogenetic site model averaging and model comparison

Bayesian phylogenetics with BEAUti and the BEAST 1.7

Bayesian Inference of Species Trees from Multilocus Data

Bayesian Inference of Species Networks from Multilocus Sequence Data

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Improving the performance of Bayesian phylogenetic inference under relaxed clock models

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences

Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics

Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Estimating Epidemic Incidence and Prevalence from Genomic Data

Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models

A stochastic simulator of birth-death master equations with application to phylodynamics

mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory

Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

Estimating the Basic Reproductive Number from Viral Sequence Data

A Bayesian phylogenetic method to estimate unknown sequence ages

Bayesian selection of nucleotide substitution models and their site assignments

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

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