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Signal-based optical map alignment

PloS one, 2021-09, Vol.16 (9), p.e0253102-e0253102

2021

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Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

PLoS genetics, 2020-09, Vol.16 (9), p.e1009027-e1009027

2020

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WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Database : the journal of biological databases and curation, 2020, Vol.2020

2020

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Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2036-2042

2019

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Artificial intelligence in the lab: ask not what your computer can do for you

Microbial biotechnology, 2019-01, Vol.12 (1), p.38-40

Ridder, Dick

2019

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TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics, 2018-11, Vol.34 (22), p.3864-3872

2018

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Correcting palindromes in long reads after whole-genome amplification

BMC genomics, 2018-11, Vol.19 (1), p.798-798, Article 798

2018

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Efficient inference of homologs in large eukaryotic pan-proteomes

BMC bioinformatics, 2018-09, Vol.19 (1), p.340-340, Article 340

2018

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Genome‐wide characterization of Phytophthora infestans metabolism: a systems biology approach

Molecular plant pathology, 2018-06, Vol.19 (6), p.1403-1413

2018

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A survey of functional genomic variation in domesticated chickens

Genetics selection evolution (Paris), 2018-04, Vol.50 (1), p.17-17, Article 17

2018

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Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.118-135

2018

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Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005734

2017

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Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe

Genome announcements (Washington, DC), 2017-04, Vol.5 (14)

2017

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AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana

The Plant journal : for cell and molecular biology, 2017-03, Vol.89 (6), p.1225-1235

2017

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The long reads ahead: de novo genome assembly using the MinION

F1000 research, 2017, Vol.6, p.1083-1083

2017

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Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

PloS one, 2017, Vol.12 (4), p.e0175670-e0175670

2017

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A sequencer coming of age: De novo genome assembly using MinION reads [version 1; peer review: 1 approved with reservations, 1 not approved]

F1000 research, 2017, Vol.6, p.1083

2017

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Selected proceedings of Machine Learning in Systems Biology: MLSB 2016

BMC bioinformatics, 2016-12, Vol.17 (Suppl 16), p.437-437, Article 437

2016

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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

The Plant cell, 2016-12, Vol.28 (12), p.2937-2951

2016

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PanTools: representation, storage and exploration of pan-genomic data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i487-i493

2016

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CyLineUp: A Cytoscape app for visualizing data in network small multiples [version 1; peer review: 2 approved]

F1000 research, 2016, Vol.5, p.635-635

2016

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Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

BMC bioinformatics, 2015-11, Vol.16 (352), p.352-352, Article 352

2015

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ACE: accurate correction of errors using K-mer tries

Bioinformatics, 2015-10, Vol.31 (19), p.3216-3218

2015

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Making the difference: integrating structural variation detection tools

Briefings in bioinformatics, 2015-09, Vol.16 (5), p.852-864

2015

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Circulating Human CD27-IgA+ Memory B Cells Recognize Bacteria with Polyreactive Igs

The Journal of immunology (1950), 2015-08, Vol.195 (4), p.1417-1426

2015

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Signal-based optical map alignment

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

Artificial intelligence in the lab: ask not what your computer can do for you

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Correcting palindromes in long reads after whole-genome amplification

Efficient inference of homologs in large eukaryotic pan-proteomes

Genome‐wide characterization of Phytophthora infestans metabolism: a systems biology approach

A survey of functional genomic variation in domesticated chickens

Computational pan-genomics: status, promises and challenges

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe

AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana

The long reads ahead: de novo genome assembly using the MinION

Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

A sequencer coming of age: De novo genome assembly using MinION reads [version 1; peer review: 1 approved with reservations, 1 not approved]

Selected proceedings of Machine Learning in Systems Biology: MLSB 2016

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

PanTools: representation, storage and exploration of pan-genomic data

CyLineUp: A Cytoscape app for visualizing data in network small multiples [version 1; peer review: 2 approved]

Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

ACE: accurate correction of errors using K-mer tries

Making the difference: integrating structural variation detection tools

Circulating Human CD27-IgA+ Memory B Cells Recognize Bacteria with Polyreactive Igs

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