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Relational patterns of gene expression via non-metric multidimensional scaling analysis

Bioinformatics, 2005-03, Vol.21 (6), p.730-740

2005

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Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Bioinformatics, 2010-10, Vol.26 (19), p.2455-2457

2010

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PilZ domain is part of the bacterial c-di-GMP binding protein

Bioinformatics, 2006-01, Vol.22 (1), p.3-6

2006

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Combenefit: an interactive platform for the analysis and visualization of drug combinations

Bioinformatics (Oxford, England), 2016-09, Vol.32 (18), p.2866-2868

2016

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E-Cell 2: Multi-platform E-Cell simulation system

Bioinformatics, 2003-09, Vol.19 (13), p.1727-1729

2003

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Meta-IDBA: a de Novo assembler for metagenomic data

Bioinformatics, 2011-07, Vol.27 (13), p.i94-i101

2011

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Accurate, scalable cohort variant calls using DeepVariant and GLnexus

Bioinformatics, 2021-04, Vol.36 (24), p.5582-5589

2021

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GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs

Bioinformatics, 2018-08, Vol.34 (16), p.2701-2707

2018

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A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae

Bioinformatics, 2005-06, Vol.21 (12), p.2883-2890

2005

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iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures

Bioinformatics, 2020-01, Vol.36 (1), p.131-135

2020

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Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Bioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3666-3672

2015

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A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

Bioinformatics, 2012-11, Vol.28 (21), p.2747-2754

2012

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MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i106-i115

2015

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METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.3178-3180

2019

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GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach

Bioinformatics, 2015-08, Vol.31 (16), p.2601-2606

2015

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MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

Bioinformatics, 2015-08, Vol.31 (16), p.2741-2744

2015

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GeneSwitches: ordering gene expression and functional events in single-cell experiments

Bioinformatics, 2020-05, Vol.36 (10), p.3273-3275

2020

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Filtering of Ineffective siRNAs and Improved siRNA Design Tool

Bioinformatics, 2005-01, Vol.21 (2), p.144-151

2005

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Improving molecular cancer class discovery through sparse non-negative matrix factorization

Bioinformatics, 2005-11, Vol.21 (21), p.3970-3975

2005

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Structure clustering features on the Sfold Web server

Bioinformatics, 2005-10, Vol.21 (20), p.3926-3928

2005

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Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers

Bioinformatics, 2012-01, Vol.28 (1), p.105-111

2012

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BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

Bioinformatics, 2005-08, Vol.21 (16), p.3439-3440

2005

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Mining coherent dense subgraphs across massive biological networks for functional discovery

Bioinformatics, 2005-06, Vol.21 (suppl-1), p.i213-i221

2005

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DUDes: a top-down taxonomic profiler for metagenomics

Bioinformatics (Oxford, England), 2016-08, Vol.32 (15), p.2272-2280

2016

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Relational patterns of gene expression via non-metric multidimensional scaling analysis

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

PilZ domain is part of the bacterial c-di-GMP binding protein

Combenefit: an interactive platform for the analysis and visualization of drug combinations

E-Cell 2: Multi-platform E-Cell simulation system

Meta-IDBA: a de Novo assembler for metagenomic data

Accurate, scalable cohort variant calls using DeepVariant and GLnexus

GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs

A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae

iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms

Structured crowdsourcing enables convolutional segmentation of histology images

METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters

GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

GeneSwitches: ordering gene expression and functional events in single-cell experiments

Filtering of Ineffective siRNAs and Improved siRNA Design Tool

Improving molecular cancer class discovery through sparse non-negative matrix factorization

Structure clustering features on the Sfold Web server

Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

Mining coherent dense subgraphs across massive biological networks for functional discovery

DUDes: a top-down taxonomic profiler for metagenomics

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